Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00030
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          88   7e-18
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)         30   2.6  
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 88.2 bits (209), Expect = 7e-18
 Identities = 41/59 (69%), Positives = 51/59 (86%)
 Frame = +2

Query: 491 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 667
           +K+ V IITR+V+ ++L+EVVNKLIPDSI KDIEK+C  IYPL DV IRKVKVLK+P+F
Sbjct: 48  RKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKF 106



 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 44/114 (38%), Positives = 63/114 (55%)
 Frame = +3

Query: 354 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLT 533
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM + +     T
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 534 LNSGRW*TS*FLTPLPRTSRRPAMASTLCAMFASER*KC*RGPVFEISKLMELH 695
            +            + +   +   +          + K  + P F+I KLME+H
Sbjct: 62  NDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMH 115


>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
          Length = 882

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +2

Query: 443 EPTQDVLRPAHSGQSNQKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 622
           EPT D  RP+H   ++      I  R +   ELR+ + +  P +   D  +  +   P+ 
Sbjct: 276 EPTPDPSRPSHRPGADNLTRDDI--RQIIQQELRKELRRSNPPNQNYDRNRRTYTGIPIS 333

Query: 623 DVCIRKVKVLKRPR 664
              IR+ ++ +RPR
Sbjct: 334 SKYIREGRIEERPR 347


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -3

Query: 248 LRKDLSASVSACRSARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLNIDGALTSYQSLR 69
           LRK L    S  +  RE  + L FNP E+ +V            L + ++  +   +SL+
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYVLQAESLKKANNVLQIELEELIKKEKSLK 361


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 52  IVDPFTRKDWYDVKAPSMFSKRQ 120
           +V+P+  KDW D    SMFS RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,566,887
Number of Sequences: 59808
Number of extensions: 524985
Number of successful extensions: 1428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)