Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00026
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)                    101   6e-22
SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)                     100   2e-21
SB_45865| Best HMM Match : Adeno_E4_34 (HMM E-Value=6)                 29   5.1  
SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)                       28   6.7  

>SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)
          Length = 758

 Score =  101 bits (242), Expect = 6e-22
 Identities = 46/73 (63%), Positives = 57/73 (78%)
 Frame = +2

Query: 509 KGCEVNPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRVF 688
           KG EV   +E++WLEA RLQP D  +AV+A A R LP SVR+W+KAA +E E  AK+RV+
Sbjct: 77  KGTEVCEKNEDIWLEAVRLQPPDAMKAVVAQAVRQLPQSVRLWIKAAAVETEIVAKKRVY 136

Query: 689 RKALEHIPNSVRL 727
           RKALEHIPNSVR+
Sbjct: 137 RKALEHIPNSVRI 149



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 27/73 (36%), Positives = 39/73 (53%)
 Frame = +2

Query: 506 NKGCEVNPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRV 685
           ++  E  P+S ELWL  ARL+  + AR V+  A  N+P    IW+ AA LE EA     +
Sbjct: 167 SRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRLIWITAAKLE-EANNNMPM 225

Query: 686 FRKALEHIPNSVR 724
             K +E    S++
Sbjct: 226 VEKIIERAVASLK 238



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/70 (35%), Positives = 37/70 (52%)
 Frame = +2

Query: 503 HNKGCEVNPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRR 682
           + K  E  P+S  +W  A  L+  + AR +++ A    P SV +W+  A LE    A R+
Sbjct: 136 YRKALEHIPNSVRIWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENA-RK 194

Query: 683 VFRKALEHIP 712
           V  KA E+IP
Sbjct: 195 VLNKARENIP 204



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = +2

Query: 527 PSSEELWLEAARLQP-IDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRVFRKALE 703
           P S  LW++AA ++  I   + V   A  ++P+SVRIW  A +LE+   A R +  +A+E
Sbjct: 113 PQSVRLWIKAAAVETEIVAKKRVYRKALEHIPNSVRIWKAAVELEEPEDA-RIMLSRAVE 171

Query: 704 HIPNSVRL 727
             P SV L
Sbjct: 172 CCPTSVEL 179



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 16/23 (69%), Positives = 21/23 (91%)
 Frame = +3

Query: 444 WIASARLEEVTGKVQTARNLIIR 512
           WIA+ARLEEVTG++Q ARN I++
Sbjct: 55  WIAAARLEEVTGRMQAARNTIMK 77



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +2

Query: 509 KGCEVNPSSEELWLEAARLQP----IDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAK 676
           +G + NP S ELWLEA R++      D AR ++A A +  P +  +W +A  +E   + K
Sbjct: 496 QGRQRNPKSPELWLEAVRIETRGGRKDFARTLMAKAMQECPTAGVLWSEAIFMEPRPQRK 555

Query: 677 RR 682
            R
Sbjct: 556 TR 557



 Score = 36.7 bits (81), Expect = 0.019
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
 Frame = +2

Query: 527 PSSEELWLEAARLQ----PIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRVFRK 694
           P +E LWL  A+ +     I +AR+++A A +  P+S  IW+ A  LE E    +R  RK
Sbjct: 375 PKAEVLWLMGAKSKWMANDIPSARSILALAFQANPNSEEIWLAAVKLESENNEDQRA-RK 433

Query: 695 ALE 703
            L+
Sbjct: 434 LLQ 436



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +2

Query: 518 EVNPSSEELWLEAARLQPIDT----ARAVIAHAARNLPHSVRIWVKAADLE 658
           + NP+SEE+WL A +L+  +     AR ++  A  N   + R+ +K+  LE
Sbjct: 406 QANPNSEEIWLAAVKLESENNEDQRARKLLQRARMN-ACTARVMMKSIKLE 455



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 575 DTARAVIAHAARNLPHSVRIWVKAADLEQE---AKAKRRVFRKALEHIPNS 718
           + +RA+ AHA    P    +W++AA  E+     ++   + + A++H P +
Sbjct: 327 ECSRAIYAHALTVFPSKKSVWLRAAYFEKNYGTRESLESLLQSAVKHCPKA 377


>SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)
          Length = 437

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 45/73 (61%), Positives = 56/73 (76%)
 Frame = +2

Query: 509 KGCEVNPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRVF 688
           KG EV   +E++WLEA RLQP D  +AV+A A R LP SVR+W+KAA +E E  AK+RV+
Sbjct: 336 KGTEVCEKNEDIWLEAVRLQPPDAMKAVVAQAVRQLPQSVRLWIKAAAVETEIVAKKRVY 395

Query: 689 RKALEHIPNSVRL 727
           RKALEHIPN VR+
Sbjct: 396 RKALEHIPNCVRI 408



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 16/23 (69%), Positives = 21/23 (91%)
 Frame = +3

Query: 444 WIASARLEEVTGKVQTARNLIIR 512
           WIA+ARLEEVTG++Q ARN I++
Sbjct: 314 WIAAARLEEVTGRMQAARNTIMK 336


>SB_45865| Best HMM Match : Adeno_E4_34 (HMM E-Value=6)
          Length = 766

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 3/144 (2%)
 Frame = +2

Query: 284 EPLMESTDPQC-HILQHRRPRLPLMQLEA-PCSFNFCSLRAIRRYKSYYVD*GSFLDCEC 457
           E +  +T PQ   ++   +   P MQ  + P   N  ++  +RR  S +   G   D   
Sbjct: 578 EQITATTSPQAVAMVTPNKTTSPQMQTPSQPKCVNSQAVALLRR--SVHAAAGRLDDSHV 635

Query: 458 -STRGSNR*STDST*SHNKGCEVNPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRI 634
            S+RG++R         +   E +P S    L  AR       + V+    +   H  + 
Sbjct: 636 MSSRGTHRVEIMLRLLPDDFAECSPDS----LMFARALNEKIYKLVLQRETKRQAHLAKT 691

Query: 635 WVKAADLEQEAKAKRRVFRKALEH 706
           W++A  L      +R  FRKAL+H
Sbjct: 692 WMQAVALSGTNMHERGTFRKALQH 715


>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 584 RAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRVFRKALEH 706
           + V+    +   H  + W++A  L      +R  FRKAL+H
Sbjct: 724 KLVLQRETKRQAHLAKTWMQAVALSGTNMHERGTFRKALQH 764


>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
          Length = 492

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -1

Query: 587 HEPCLLVASELPLAIALHCSD*LHIPYYEITCCLYFTCYFL*SSTRNP 444
           H P    A  L L +  H +  +H PYY   C L  TC    + T  P
Sbjct: 178 HAPYYTYARNL-LHLCTHPTTLMHAPYYTYACNLLHTCTHTTTLTHAP 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,684,130
Number of Sequences: 59808
Number of extensions: 409742
Number of successful extensions: 958
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)