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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00013
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   4e-09
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)               30   1.2  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_31541| Best HMM Match : EGF (HMM E-Value=0)                         29   2.1  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    29   2.1  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         29   3.8  
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          29   3.8  
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          29   3.8  
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)                   28   6.6  
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)                    27   8.7  
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)                    27   8.7  
SB_11973| Best HMM Match : Cupin_1 (HMM E-Value=3.4)                   27   8.7  

>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 37/82 (45%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +2

Query: 11  ALVRPLAAVPTHTQMVPAVPTQLS-AVRSFQTISVTKDIDSAAKFXXXXXXXXXXXXXXX 187
           A +RP +       +VPA P   + A R FQT S  +D+DSAAKF               
Sbjct: 62  AAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSGA 120

Query: 188 XXXXXFGSLIIGYARNPSLKQQ 253
                FGSLIIGYARNPSLKQQ
Sbjct: 121 GIGTVFGSLIIGYARNPSLKQQ 142



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 229 QEPLPQAAVFSYAILGFALSE 291
           + P  +  +FSYAILGFALSE
Sbjct: 135 RNPSLKQQLFSYAILGFALSE 155


>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
          Length = 565

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 142 EFGSRVNVLSDRYGLEGPHCR-ELCRDSRYHLCMGG 38
           E   R NVLSD  GLE   CR  LC +  +  C  G
Sbjct: 76  EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -2

Query: 193  NTSSGTSYSHCRCTSTNEFGSRVNVLSDRYGLEGPHCRELCRDSRYHLCMG-GYCCKWSH 17
            NT     Y   +   TN    ++      Y   G  C +LC+   +++C G G C +W+ 
Sbjct: 5364 NTPCVFGYPVVQTNGTNTTSDKICECEQGYW--GEDCGKLCKGGIWNVCNGHGTCNRWTG 5421

Query: 16   QC 11
             C
Sbjct: 5422 DC 5423


>SB_31541| Best HMM Match : EGF (HMM E-Value=0)
          Length = 268

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 1   CNSGTGATTCSSTHPYTDGTCCPYTALCSAVLPDH 105
           CN G    TCS    +T GT C  TA CS ++ D+
Sbjct: 205 CNDGVNKYTCSCIPGFT-GTNCE-TANCSGIIKDY 237


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 372 VVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 265
           +V  LK    ESEE  E  H  EQ H  +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   CNSGTGATTCSSTHPYTDGTCCPYTALC---SAVLPDHIGH*GH*LCCQIHWCWCSDSGS 171
           C     + TC     YT  TC    + C   S V  + +G+ GH   C+   CW   SG+
Sbjct: 322 CTESNSSFTCECFSGYTGPTCAVVESACKPTSCVNGECVGN-GHNSSCK---CWKGYSGA 377

Query: 172 S 174
           S
Sbjct: 378 S 378


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 25  TCSSTHPYTDGTCCPYTALCSAV 93
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 25  TCSSTHPYTDGTCCPYTALCSAV 93
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
          Length = 1199

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 280 RNPEWRMRTLLLEGGVPGIADDEGAEDCSNTSSGTSYSHCRCTSTNEFG 134
           R+ EW  R ++L   V G+      E+   TSS  S+SH      +E G
Sbjct: 787 RDTEWNTRNVVLGYDVAGVWRSTPTEENLVTSSDLSWSHDLLAVGDELG 835


>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
 Frame = +1

Query: 166 GSSWFRSWYWNSLR--LPHH-----RLCQEPLPQ 246
           G +WF SW W  +   LPH+     + C E LP+
Sbjct: 261 GENWFLSWIWPKITSPLPHNGTDYTQACNEELPK 294


>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 360 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 268
           LK    E E+QQ +HHK E+     Q E Q+
Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -2

Query: 169 SHCRCTSTNEFGSRVNVLSDRYGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCQSC 2
           S CR    + FG+    + D  G     C+      R HLC  GY    S  C++C
Sbjct: 607 SGCRACECDPFGTLPGSVCDA-GSGQCRCKAGSTGLRCHLCEDGYHSLDSSGCKTC 661


>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
          Length = 186

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 12  HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPYRSLRTL 125
           HW + +    PI RW+ L   H+SL   P+RP R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165


>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
          Length = 201

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 82  RELCRDSRYHLCMGGYCCKWSHQ 14
           R  CR    HLC+G   C+W  Q
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQ 195


>SB_11973| Best HMM Match : Cupin_1 (HMM E-Value=3.4)
          Length = 394

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/63 (20%), Positives = 30/63 (47%)
 Frame = +3

Query: 72  HSSLQCGPSRPYRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPPSSS 251
           H  +Q  P+    + +T++  P  + +     + +VP  V  QS   S   + G+P +++
Sbjct: 147 HMQIQAQPAGSAVTAQTVSAQPTMVTVASMASQPIVPSAVTAQSLIHSQRTLAGSPSTTA 206

Query: 252 SVL 260
            ++
Sbjct: 207 QLV 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,634,011
Number of Sequences: 59808
Number of extensions: 401135
Number of successful extensions: 1554
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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