Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00005
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              180   1e-45
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             179   2e-45
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             144   4e-35
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             140   7e-34
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         93   2e-19
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         80   2e-15
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         76   2e-14
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         75   7e-14
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   1e-10
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          62   5e-10
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   7e-07
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            36   0.038
SB_46603| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.3  
SB_8542| Best HMM Match : PT (HMM E-Value=4)                           28   5.7  
SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05)                 28   5.7  
SB_57429| Best HMM Match : zf-UBR1 (HMM E-Value=8.7)                   28   7.6  

>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  180 bits (437), Expect = 1e-45
 Identities = 83/110 (75%), Positives = 90/110 (81%), Gaps = 1/110 (0%)
 Frame = -3

Query: 549 TAENFRALCTGEK-VGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGRTFSDENFKLK 373
           TAENFR LCT EK  GYKGSSFHRIIP FMCQGGDFT HNGTGGKSIYG  F DENF LK
Sbjct: 165 TAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQGGDFTKHNGTGGKSIYGAKFEDENFVLK 224

Query: 372 HTGPGILSMANAGPNTNGSQFFITTVPTPWLDRKHVVFGLWLKVWMLCRK 223
           HTG G+LSMAN+GPNTNGSQFF+TT  T WLD KHVVFG  ++ + + RK
Sbjct: 225 HTGAGVLSMANSGPNTNGSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRK 274



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = -2

Query: 253 VVEGMDVVQKMEKLGSKSGKPIKKVVISDSGEL 155
           V+EG DVV+KME +GS+SGK  KKVVI D GEL
Sbjct: 265 VIEGFDVVRKMEAVGSQSGKASKKVVIDDCGEL 297


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  179 bits (436), Expect = 2e-45
 Identities = 81/100 (81%), Positives = 86/100 (86%), Gaps = 1/100 (1%)
 Frame = -3

Query: 552 ETAENFRALCTGEK-VGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGRTFSDENFKL 376
           +TAENFRALCTGEK  GYKGSSFHR+IP FMCQGGDFT  +GTGGKSIYG  F+DENF L
Sbjct: 30  KTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGDFTRGDGTGGKSIYGAKFADENFNL 89

Query: 375 KHTGPGILSMANAGPNTNGSQFFITTVPTPWLDRKHVVFG 256
           KHTGPGILSMANAGP TNGSQFF+ T  T WLD KHVVFG
Sbjct: 90  KHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFG 129



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = -2

Query: 253 VVEGMDVVQKMEKLGSKSGKPIKKVVISDSGEL 155
           V +GMDVV+K+EK+GS SGK  KKVVI+DS  +
Sbjct: 131 VKDGMDVVKKIEKVGSDSGKTSKKVVIADSASV 163


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  144 bits (350), Expect = 4e-35
 Identities = 66/88 (75%), Positives = 73/88 (82%)
 Frame = -3

Query: 507 GYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGRTFSDENFKLKHTGPGILSMANAGPN 328
           GYK S FHR+I DFM QGGDFT  +GTGGKSIYG+ F+DENFKL+H G G LSMANAG +
Sbjct: 88  GYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADENFKLQHYGAGWLSMANAGKD 147

Query: 327 TNGSQFFITTVPTPWLDRKHVVFGLWLK 244
           TNGSQFFITTV TPWLD +HVVFG  LK
Sbjct: 148 TNGSQFFITTVKTPWLDGRHVVFGKVLK 175


>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  140 bits (340), Expect = 7e-34
 Identities = 68/114 (59%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
 Frame = -3

Query: 552 ETAENFRALCTGEK-VGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGRTFSDENFKL 376
           +T  NF AL   E+  GYK S FHR+I +FM QGGDFTN +GTGG SIYG+ F DENF L
Sbjct: 53  KTVANFVALADKEQGFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNL 112

Query: 375 KHTGPGILSMANAGPNTNGSQFFITTVPTPWLDRKHVVFGLWLKVWMLCRKWKN 214
           KH GPG L MANAG NTNGSQF+ITT+ T WLD  H  FG  L+   + R+ +N
Sbjct: 113 KHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSHTCFGKVLEGMDVVRRIEN 166


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 43/65 (66%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
 Frame = -3

Query: 435 NGTGGKSIYGRTFSDENFK-LKHTGPGILSMANAGPNTNGSQFFITTVPTPWLDRKHVVF 259
           +GTGG+SI+G  F DE  + L+H  P  +SMANAGPNTNGSQFFIT VPTPWLD KH VF
Sbjct: 2   DGTGGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVF 61

Query: 258 GLWLK 244
           G  +K
Sbjct: 62  GRVVK 66


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 32/59 (54%), Positives = 42/59 (71%)
 Frame = -3

Query: 432 GTGGKSIYGRTFSDENFKLKHTGPGILSMANAGPNTNGSQFFITTVPTPWLDRKHVVFG 256
           G GG+S+YG  F DE+F + H   G++ MAN G +TNGSQF+IT  P PW+D K+V FG
Sbjct: 46  GIGGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFG 104


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = -3

Query: 375 KHTGPGILSMANAGPNTNGSQFFITTVPTPWLDRKHVVFGLWLK 244
           +H  PG+LSMAN+GPNTNGSQFFITTVPTP LD +HVVFG  LK
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLK 231


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 34/47 (72%), Positives = 37/47 (78%)
 Frame = -3

Query: 435 NGTGGKSIYGRTFSDENFKLKHTGPGILSMANAGPNTNGSQFFITTV 295
           NGTGG+SIYG TF DE F+ KH  P +LSMAN GPNTNGSQFFI  V
Sbjct: 25  NGTGGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFIIHV 71


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 31/49 (63%), Positives = 37/49 (75%)
 Frame = -3

Query: 348 MANAGPNTNGSQFFITTVPTPWLDRKHVVFGLWLKVWMLCRKWKNLVLK 202
           MANAG +TNGSQFFITTV T WLD KHVVFG  L+   + RK +N+ +K
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNVK 49



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = -2

Query: 253 VVEGMDVVQKMEKLGSKSGKPIKKVVISDSGEL 155
           V+EGMDVV+K+E +  K   P+K  +I DSG L
Sbjct: 33  VLEGMDVVRKLENVNVKGSTPVKTCMIDDSGTL 65


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 27/34 (79%), Positives = 28/34 (82%)
 Frame = -3

Query: 357 ILSMANAGPNTNGSQFFITTVPTPWLDRKHVVFG 256
           ILSMANAGP TNGSQFF+ T  T WLD KHVVFG
Sbjct: 2   ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFG 35


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 23/45 (51%), Positives = 29/45 (64%)
 Frame = -3

Query: 381 KLKHTGPGILSMANAGPNTNGSQFFITTVPTPWLDRKHVVFGLWL 247
           +  H   G +SMAN GPN+NGSQFFI     P LD K+ +FG +L
Sbjct: 298 RCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGKYL 342


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -3

Query: 504 YKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGRTFSDENFKLKHTGPGILSMANAGPNT 325
           Y G+ FHR+IP FM QGG F             +  +D      H   G L+MA      
Sbjct: 60  YAGTQFHRVIPGFMVQGGGFDADMQQKDTQAPIKNEADNGL---HNVRGTLAMARTQVRD 116

Query: 324 NG-SQFFITTVPTPWLDRKHVVFG 256
           +  SQFFI      +LD     FG
Sbjct: 117 SATSQFFINHKDNAFLDHGSRDFG 140


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 9/33 (27%)
 Frame = -3

Query: 552 ETAENFRALCTGEK-VG--------YKGSSFHR 481
           +TAENFRALCTGEK +G        YKG  FHR
Sbjct: 15  KTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_46603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 518 PVHRALKFSAVSVLHPCQFMIYVQWL 595
           P+HR + + A+ +  PC F++ + W+
Sbjct: 264 PMHRRIGYYAIQMYVPCTFLVMLSWI 289


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 191  WFTTFRTKFFHFLHNIHTFNHNPNTTCFLSNQGVGTVVIKN*DP 322
            W T++R ++        ++ HN     F  N+  G+VV+ + DP
Sbjct: 1298 WVTSYRVEYSQDGSVFSSYQHNGKDVIFTGNRDRGSVVLHSFDP 1341


>SB_8542| Best HMM Match : PT (HMM E-Value=4)
          Length = 650

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 220 PFSAQHPYLQPQPKYYMFSIQPRSR 294
           P S  +PY  PQPKYY  S  P+SR
Sbjct: 342 PQSRYYPYGNPQPKYYP-SGNPQSR 365


>SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05)
          Length = 1200

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 351 SMANAGPNTNGSQFFITTVPTPWLDRKHVVFGLWLKVWML 232
           S+ +  PN  G    +        + K+V+FG W+ VW +
Sbjct: 171 SLQSTRPNNTGRPELVIQCNDQLAESKNVLFGTWVIVWFI 210


>SB_57429| Best HMM Match : zf-UBR1 (HMM E-Value=8.7)
          Length = 122

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 199 GKPIKKVVISDSGELD*SCLVVNSGISKYVRKNYLDLMFVIAIKCREKSC 50
           GKP+ + V+  +GEL  +C      +    R N LD ++    +CR K C
Sbjct: 10  GKPVNERVMDMTGELRDTCGYSRDKL--VFRCNALDQVWFSVAQCRRKRC 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,948,885
Number of Sequences: 59808
Number of extensions: 407991
Number of successful extensions: 991
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)