Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D13
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)             32   0.30 
SB_52287| Best HMM Match : Myb_DNA-binding (HMM E-Value=4.5)           31   0.53 
SB_43749| Best HMM Match : Lipase_GDSL (HMM E-Value=0.077)             29   2.1  
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)               28   3.7  
SB_42716| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_24082| Best HMM Match : Cys_rich_FGFR (HMM E-Value=8.2)             27   6.5  
SB_51787| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
          Length = 350

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +2

Query: 41  QKLARTF*FIFVCEWKNINDNKLIDSEMSKRRYQQRHNCITVIPTDEKSPTKNFKMDTLA 220
           QK    F  IF C+  ++       +   +R+ Q R NC +VI ++  SP  N ++  L 
Sbjct: 280 QKFKIAFSQIFRCQKPDLRSATRHTNSTIRRQSQSRRNCYSVISSNSPSPAPNRRL--LP 337

Query: 221 FTEDNYLQDE 250
             E+  ++ E
Sbjct: 338 INEEALIEKE 347


>SB_52287| Best HMM Match : Myb_DNA-binding (HMM E-Value=4.5)
          Length = 529

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
 Frame = +2

Query: 173 TDEKSPTKNFKMDTLAFTEDNYLQDEILDDIKQGTIAPCSQPE-----KQIKLNLKSERK 337
           T+E++ T+    D +   E  + Q E+L   K+    P ++       + I L+LKS RK
Sbjct: 309 TEERAATEGISEDQMKQAEQYFEQVELL--WKEQKENPSNRDVIRSYIRLIMLHLKSSRK 366

Query: 338 CDETTKTQIHSENTLHGYCILKEKGTHITSN 430
              +T+ +IH +  L    ++     H+ S+
Sbjct: 367 SFPSTRDEIHMDRILRAQMVVNHVEHHLMSS 397


>SB_43749| Best HMM Match : Lipase_GDSL (HMM E-Value=0.077)
          Length = 399

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 215 LAFTEDNYLQDEILDDI-KQGTIAPCSQPEKQIKLNLKSERK 337
           +AF   NY++  +LDD+ KQG     S P K + L +K E K
Sbjct: 288 IAFLMTNYVK-SVLDDVTKQGANMAQSYPTKALSLFVKEETK 328


>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
          Length = 936

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 202 EVLCRRFFIRRYYSNAVMTLL 140
           +V+C+R F  RYYS A+ TL+
Sbjct: 149 QVICQRCFDLRYYSKAIPTLV 169


>SB_42716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 269 QGTIAPCSQPEKQIKLNLKSERKCDETTKTQIHSENTLHGYCILKEKGTHITSNDMKHES 448
           Q T + C  P    K NLK     ++ T  +   +N      I+K++        +KH++
Sbjct: 164 QHTYSKCHVPATCHKCNLKKRNDTEKETLKEKTEKNKKEPEPIIKKQENIEYKRSLKHKN 223

Query: 449 R-SFHE 463
           + SFH+
Sbjct: 224 KCSFHQ 229


>SB_24082| Best HMM Match : Cys_rich_FGFR (HMM E-Value=8.2)
          Length = 140

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 302 KQIKLNLKSERKCDETTKTQIHSENTLHGYCILKEKGT 415
           K  +L +K +R+C       I   NT    C+++EKG+
Sbjct: 66  KIARLQVKIDRRCSSKAIQSICFSNTHISSCLMREKGS 103


>SB_51787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +2

Query: 125 SKRRYQQRHNCITVIPTDEKSPTKNFKMDTLAFTEDNYLQDEILDDI-KQGTIA---PCS 292
           SKR+ +QR+N I   P   K+ + N     L+  + ++ +D  L  I  + TI     C+
Sbjct: 140 SKRKNRQRNNIIWYNPPFSKNTSTNIGHRFLSLIDKHFPKDHKLRKIFNRNTIKISYSCT 199

Query: 293 QPEKQIKLNLKSERKC 340
              KQI   + S  KC
Sbjct: 200 SNTKQI---IDSHNKC 212


>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 443 HVSYRWMLYECLFLLICSIHGEYFL 369
           H    W+L+ C FLLI +  G Y L
Sbjct: 845 HTMGSWVLFVCCFLLIVASLGTYLL 869


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,399,591
Number of Sequences: 59808
Number of extensions: 271235
Number of successful extensions: 806
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)