Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D09
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          68   5e-12
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)                31   0.77 
SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.0  
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        29   3.1  
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_31611| Best HMM Match : Peptidase_M16_C (HMM E-Value=0.0021)        28   4.1  
SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041)                    27   7.2  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         27   9.5  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 32/57 (56%), Positives = 39/57 (68%)
 Frame = +3

Query: 264 IFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 434
           I  GRK  G  PSHF   S S+AR  L+ LE +KLVEK   GGR +T+QG+RD+DRI
Sbjct: 32  IRAGRKNRGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = +2

Query: 104 TGKVKVPEHMDLVKTARFKELAPYDP 181
           +G +K+P+ +DLVKT +FKELAPYDP
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDP 27


>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
          Length = 689

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 18/78 (23%), Positives = 30/78 (38%)
 Frame = +2

Query: 110 KVKVPEHMDLVKTARFKELAPYDPXLVLCALCCHPSSYLHSLTCWSKDCHQDLWWAQT*W 289
           K++ P H  L +      +A +    + C +CC     L  L C  + CH    W    W
Sbjct: 161 KIRTPAHT-LSQVTMTNNMADH----MTCIICCEGDDELELLPCCKQPCHYPCLWK---W 212

Query: 290 SYTFTFLQVIRQYCTQGF 343
            +     +    +C +GF
Sbjct: 213 VHAHLTPRSTCPHCRKGF 230


>SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 191 LCALCCHPSSYLHSLTCWSKDCHQ 262
           LC+  C   S+ H+LTC ++ CHQ
Sbjct: 99  LCSQSCVWESHCHALTCTARICHQ 122


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 302 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 394
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 21  TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51


>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 302 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 394
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 286 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316



 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 302 TFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 394
           TF   +   C +GF ++G  + +C +SSG+WS
Sbjct: 112 TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 55  C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 174
           C   QDC + RC  +KNG  + T A G CK S    + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339


>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 189 FYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKL 368
           +YVR A +     I +  G   + +I   R+R  VTPS    S G    + L  L+ ++L
Sbjct: 59  WYVRDACVSPSENISTNYGSPKLPRIVETRQRGDVTPSPLVLSRGISRERLLTKLDRMQL 118


>SB_31611| Best HMM Match : Peptidase_M16_C (HMM E-Value=0.0021)
          Length = 398

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 77  KTVAAHLKKT--GKVKVPEHMDLVKTARFKELAP-YDPXLVLCALCCHPS 217
           K+V++ L +    KV      DL +  + + LAP +DP    CA+CC+PS
Sbjct: 268 KSVSSWLARDLLNKVSQVTMSDLERVGQ-RYLAPLFDPVTSWCAVCCNPS 316


>SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041)
          Length = 204

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 467 RLSNKSLYFNFMLIKI*N 520
           R+ NKS++FNF ++KI N
Sbjct: 48  RVENKSIFFNFQVLKIAN 65


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
 Frame = +2

Query: 197 ALCCHPS-SYLHSLTCWS----KDCHQDLWW 274
           A  CH + +YLH++TC++    K  H D +W
Sbjct: 374 AFLCHATFAYLHAVTCYNTSFVKGEHMDYYW 404


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -1

Query: 440  GSDSVKVSSTLCGENATTVLNF----LNKLQCLQRLQSL 336
            G+D V  S  + G+NATT + F    LN+ + L+ L++L
Sbjct: 2845 GTDKVHYSVVIFGDNATTPIQFNDGPLNEGELLKALENL 2883


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 302  TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSHSHHT 409
            T+   I   C +G+A++G      +++G WS S+ T
Sbjct: 913  TYSSTINITCDEGYALIGPESRVCQANGTWSGSNVT 948


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943,520
Number of Sequences: 59808
Number of extensions: 319917
Number of successful extensions: 750
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)