Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D03
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.064
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)                  28   1.8  
SB_55523| Best HMM Match : Peptidase_M16_C (HMM E-Value=3.1e-13)       27   5.5  
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       27   5.5  
SB_31774| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_52779| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_46765| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.89)          26   9.7  
SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)                  26   9.7  

>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 33.1 bits (72), Expect = 0.064
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +1

Query: 103  EMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTM 273
            E+ K D+   +E    V + + +T +    F KD+VKGYVI ++D +   + +  T+
Sbjct: 1121 EIAKVDVGFIIESSRTVGLDNFKTVLT---FVKDIVKGYVISQNDSRFGIIIVSSTL 1174


>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1174

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 18/74 (24%), Positives = 36/74 (48%)
 Frame = +1

Query: 118 DIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLF 297
           +IK   E   E+ ++++R K+   + +K    G   +EDD+K + +    +   +  +L 
Sbjct: 505 EIKTLKEASKELELIELREKLTKSEEEKMATLGKAQQEDDIK-SLMEKIASKEAELRELG 563

Query: 298 EKSINEEEEHAKSL 339
           EK    E+E +  L
Sbjct: 564 EKLTKSEQEKSDEL 577


>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
          Length = 906

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +1

Query: 31  NFWMKLVRPHPKQLPNIVHFHCSMEMT-KYDIKNYLEKIYEVPVVDVRTKINMGKFKKDV 207
           ++W+ L +P  KQL N  H   +  +T K+ +K ++   Y +   ++   +   + KK+V
Sbjct: 635 DWWLDLAKPVAKQLSN--HGRIAAVVTLKFRVKYFVCNAYSLQ-EEIARYLYYLQLKKNV 691

Query: 208 VKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSIN 312
           + G ++ ++   V   +      F Y  +  K ++
Sbjct: 692 LAGLLLCDEQAAVVLASYIAQGDFAYTPISIKVVS 726


>SB_55523| Best HMM Match : Peptidase_M16_C (HMM E-Value=3.1e-13)
          Length = 209

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 49  VRPHPKQLPNIVHFHCSMEMTKYD 120
           V P P  LP + H    +E T YD
Sbjct: 8   VNPGPTPLPELAHVSIGLESTSYD 31


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 49  VRPHPKQLPNIVHFHCSMEMTKYD 120
           V P P  LP + H    +E T YD
Sbjct: 711 VNPGPTPLPELAHVSIGLESTSYD 734


>SB_31774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 184 MGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEK 303
           +GK  +    G ++K+++   A  TL  T +F Y + F+K
Sbjct: 345 LGKGTRFATIGNLLKDENFDSAVTTLRNTPSFVYKETFKK 384


>SB_52779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +1

Query: 70  LPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDV 168
           +PN++ +H S+E +   + ++LEK    P++D+
Sbjct: 55  VPNVLEYHRSLECSSQALLHHLEK--RQPLIDM 85


>SB_46765| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.89)
          Length = 197

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 178 INMGKFKKDVVKGYVIKEDDVK 243
           IN+GK KKD  K  V  EDD K
Sbjct: 39  INIGKHKKDDKKEQVHTEDDKK 60


>SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)
          Length = 831

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 229 EDDVKVAFVTLPKTMTFKYPDLFEKSINEEEE 324
           EDD    FV LP TMT K     E +  E+ +
Sbjct: 666 EDDNDAPFVMLPPTMTSKSDKTSESNKEEDSD 697


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,702,134
Number of Sequences: 59808
Number of extensions: 135704
Number of successful extensions: 327
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)