Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_C22
(531 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.) 237 5e-63
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85) 29 2.4
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09) 28 4.1
SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7) 28 5.4
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 28 5.4
SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05) 27 7.2
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) 27 7.2
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_25000| Best HMM Match : 7tm_1 (HMM E-Value=1.49995e-41) 27 9.5
>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 237 bits (579), Expect = 5e-63
Identities = 103/129 (79%), Positives = 122/129 (94%)
Frame = +2
Query: 62 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 241
+KFQHILR++NTNIDGK+K+MFAMT+IKGVGRRY+NIV KKADID++KRAGE TE+EVE+
Sbjct: 7 EKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELTEDEVER 66
Query: 242 IITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 421
++TIM NPRQYKIPDWFLNRQKD DGKYSQ+ ++ LD+K+REDLERLKKIRAHRG+RHY
Sbjct: 67 VVTIMQNPRQYKIPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAHRGLRHY 126
Query: 422 WGLRVRGQH 448
WGLRVRGQH
Sbjct: 127 WGLRVRGQH 135
>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 54.8 bits (126), Expect = 4e-08
Identities = 22/28 (78%), Positives = 28/28 (100%)
Frame = +2
Query: 62 DKFQHILRIMNTNIDGKRKVMFAMTAIK 145
+KFQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 7 EKFQHILRVLNTNIDGKQKIMFAMTSIK 34
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +2
Query: 212 GECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKK 391
GEC ++V + +PR K PD LN KD +GK T+ + ++L D ++ K
Sbjct: 645 GECVTQKV----CVHLDPRS-KHPDPSLNVNKDSEEGKTQAQTTDEIIAQLISDHKKKKN 699
Query: 392 IRAH 403
R+H
Sbjct: 700 ARSH 703
>SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 176 LKKADIDLDKRAGECTEEEVEKII-TIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSS-N 349
LK+ ++L +A TE+E+ + ++M+N R K+ L + D + K LTSS
Sbjct: 726 LKRVKVEL--QASRQTEQELRSTMHSLMANERSAKVELSQLKAENDSLQHKIQSLTSSRQ 783
Query: 350 LDSKLREDLERLKKIRAHRGMR 415
D LER K+++ R R
Sbjct: 784 QDRSAISSLER--KLKSERDAR 803
>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
Length = 1459
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 415 SHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTIN-NILLPI*EPVWYLILPRIRHDSDNF 239
+HPSVS +L + + T + V GQ + + ++ + + + VWY P + D +F
Sbjct: 874 THPSVSVSLGQSIWYHTHLSVSVSLGQSIWYNTHLSVSVSLCQSVWYHTHPSVLQDVLDF 933
Query: 238 F 236
+
Sbjct: 934 Y 934
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 275 KIPDWFLNRQKDIVDGKYSQLTSSNLD-SKLREDLERLKKIRAHRGMR 415
K+ W L+ V+ KY + S + + + LRE+LE +KK+R G++
Sbjct: 2757 KLHQWLLD-----VENKYKEKASDSANVAVLREELEDIKKLRQDMGIQ 2799
>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
Length = 458
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +2
Query: 50 LNQNDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEE 229
+++ +F+H ++ + KRK + + +NI K DIDL G CTE+
Sbjct: 54 VHERVEFRHEVQASTRKVSSKRKPIRKRRTVT------ANISATKYDIDL---LGYCTEQ 104
Query: 230 EVEKII 247
E+ +++
Sbjct: 105 EIRRVV 110
>SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7)
Length = 1376
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 236 EKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN--LDSKLREDLER 382
++I T M + K+ + ++K+ ++GKY QL S L+S +D R
Sbjct: 1207 DQICTHMHEVEELKLKIARIEKEKEYLEGKYDQLNSDKPVLESSRVDDFSR 1257
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -1
Query: 234 TSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIAN 124
T +++HS + ++++ F+ + +E RPT L ++ N
Sbjct: 826 TDTALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGN 862
>SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05)
Length = 407
Score = 27.5 bits (58), Expect = 7.2
Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 7/135 (5%)
Frame = +2
Query: 53 NQNDKFQHILRIMNTN-----IDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGE 217
+ NDK + I N + ID KRK + + I V + + + K E
Sbjct: 236 SDNDKLKIIRNKWNVDEEGRVIDAKRKYVVHKSTIHDVLSQAHKAICHRGRDKTAKYLSE 295
Query: 218 CTEEEVEKIITIMSNPRQYKIPDWFLNR--QKDIVDGKYSQLTSSNLDSKLREDLERLKK 391
++IIT+ ++ + L +K + + + S L DL +K
Sbjct: 296 NYSNLPKQIITLFTSICKLHQEQASLTNYCKKPVTKPRSGNPQADGFLSHLEMDLIDFRK 355
Query: 392 IRAHRGMRHYWGLRV 436
I + G RH W L V
Sbjct: 356 IPCNCGRRHLWALHV 370
>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
Length = 1290
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 293 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 388
L R+K + + KY + +N D K RE++E LK
Sbjct: 873 LRREKKVFE-KYQKAARANPDKKEREEIESLK 903
>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = +2
Query: 332 QLTSS--NLDSKLREDLERLKKI 394
QLTS N+D K+RE LE++KK+
Sbjct: 72 QLTSEEDNVDPKIREGLEKIKKL 94
>SB_25000| Best HMM Match : 7tm_1 (HMM E-Value=1.49995e-41)
Length = 361
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 3 FFSFPLCCVLGTLVRNLTKMTNFNIF 80
FF + C+L T R L TNF+IF
Sbjct: 49 FFGNSMVCLLITRTRRLRNCTNFSIF 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,119,175
Number of Sequences: 59808
Number of extensions: 327647
Number of successful extensions: 897
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -