Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_B19
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         84   1e-16
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)           30   1.9  
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                 30   1.9  
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)          29   2.5  
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_49976| Best HMM Match : SEC-C (HMM E-Value=0.95)                    29   3.3  
SB_28798| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)              29   4.4  
SB_31862| Best HMM Match : E7 (HMM E-Value=4.4)                        29   4.4  
SB_13076| Best HMM Match : NUC202 (HMM E-Value=3)                      29   4.4  
SB_8585| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          28   5.8  
SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)                   28   7.6  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              28   7.6  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    28   7.6  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = +2

Query: 383 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 532
           MRGAFGKPQGTVARV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -3

Query: 541 YVDLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 386
           Y +  ++G   + T     D+C+P   + HGH    +ANT  CY  +  A  +T
Sbjct: 68  YAESCSAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119


>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
          Length = 650

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 271 LXRYLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 131
           L  Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 249 LAGYIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294


>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 1273

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 271  LXRYLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 131
            L  Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 1017 LAGYIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062


>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
          Length = 718

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 43  GAGQRDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 177
           G G    T     N++  +G V   LIP+   +I VR  +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 234 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 118
           PK  SS V+  RT  AR    ++R++  Y  ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331


>SB_49976| Best HMM Match : SEC-C (HMM E-Value=0.95)
          Length = 1037

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -3

Query: 340 IDADKRGKGEVSCGYGTDPFRSSLXRYLLQQIRPASKASELSCSYSSDTKCTHSGK 173
           ++AD + KG +  G   +P  ++L R+ L     AS  + L  +YS+ +  THS K
Sbjct: 767 VNADSKSKGGI-VGISQNP--AALQRWFLTSHERASVTTALKDAYSAQSDHTHSHK 819


>SB_28798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -3

Query: 340 IDADKRGKGEVSCGYGTDPFRSSLXRYLLQQIRPASKASELSCSYSSDTKCTHSGK 173
           ++AD + KG +  G   +P  ++L R+ L     AS  + L  +YS+ +  THS K
Sbjct: 7   VNADSKSKGGI-VGISQNP--AALQRWFLTSHERASVTTALKDAYSAQSDHTHSHK 59


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +2

Query: 389  GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKW 553
            G  G+P G+V  +      +++++  +W   + E++  A + FP       S+ W
Sbjct: 1109 GVDGRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163


>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
          Length = 1487

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -3

Query: 340 IDADKRGKGEVSCGYGTDPFRSSLXRYLLQQIRPASKASELSCSYSSDTKCTHSGKSST 164
           ++AD + KG +  G   +P  ++L R+ L     AS  + L  +YS+ +  THS + S+
Sbjct: 479 VNADSKSKGGI-VGISQNP--AALQRWFLTSQERASVTTALKDAYSAQSDHTHSQELSS 534


>SB_31862| Best HMM Match : E7 (HMM E-Value=4.4)
          Length = 584

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -3

Query: 340 IDADKRGKGEVSCGYGTDPFRSSLXRYLLQQIRPASKASELSCSYSSDTKCTHSGKSST 164
           ++AD + KG +  G   +P  ++L R+ L     AS  + L  +YS+ +  THS + S+
Sbjct: 42  VNADSKSKGGI-VGISQNP--AALQRWFLTSQERASVTTALKDAYSAQSDHTHSQELSS 97


>SB_13076| Best HMM Match : NUC202 (HMM E-Value=3)
          Length = 472

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 3/127 (2%)
 Frame = -3

Query: 463 TRAHGHDGLSNAN--TCYSTLRLAKRTTHPSLEPISSSA**HFIDADKRGKGEV-SCGYG 293
           T  HG    +N    TC S   LAKR    +LE  S  +  H+    K G+  V S    
Sbjct: 341 THLHGRGVGANQRPETCPSDNELAKRYNRNALEYESELSSHHYPTLHKAGEASVGSESNT 400

Query: 292 TDPFRSSLXRYLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIRILGSGT 113
           T P  S+        + P  + S    S + D     +  S+T  +     +++      
Sbjct: 401 TSPASSTSSPVHSGPVTPIREVSNADFSNTPDIHLKFADPSTTATVMNVHRRLKETREML 460

Query: 112 PRQNLDF 92
            R NL++
Sbjct: 461 ARTNLNY 467


>SB_8585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 229 LWRQDVSAAISTSXKNCGKDQFHIRMRLHPFHVYP 333
           +W+ D S+A+STS K      FH   +LHP H  P
Sbjct: 126 VWK-DTSSALSTSLKRYIIRTFHQSGKLHPPHFPP 159


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 66  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 245
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 246 IC 251
           +C
Sbjct: 500 MC 501


>SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)
          Length = 1054

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 15  WCHFVKITMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRAT 164
           W   ++I++  R    +R        K+RF + VP+P+I+    G+  +T
Sbjct: 137 WIDLLRISLNLRGNSVFRRSNKGEKEKARFKKSVPEPRIQPDSQGQVGST 186


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 391 CVWQASGYCSTCSHWTAHHV 450
           C W  +G C  C HW   HV
Sbjct: 79  CYWIRTGCCHLCWHWRPLHV 98


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 420 HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMS 581
           HV A   P  P + +    + +S   A+ +SS+P +  S  Q +  + + N  S
Sbjct: 261 HVIANQHPPAPVSQLQSNSNNASAARAITTSSNPSISTSVLQGNLSTNARNTAS 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,347,369
Number of Sequences: 59808
Number of extensions: 541042
Number of successful extensions: 1767
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1765
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)