Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a07r
(783 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7) 27 0.65
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_26361| Best HMM Match : fn3 (HMM E-Value=0) 30 2.4
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_9107| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_8264| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-06) 28 7.4
SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_6979| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
Length = 290
Score = 27.1 bits (57), Expect(2) = 0.65
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -2
Query: 611 VNNLIIDKRRNTMEYCYKLWVGNGQDIV 528
+++L++ +++ YC+ NGQDIV
Sbjct: 130 IHDLLLSLQKHLFAYCHNATSNNGQDIV 157
Score = 23.4 bits (48), Expect(2) = 0.65
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -2
Query: 530 VKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGSTTNPSNERIAYGDGVDKH 378
++ YF L+M+G L+ + +L L S R+ G G D H
Sbjct: 183 IRYYFACFQELLMSGPANSLLQSHLSLFLPCAGEILGSVYRLLVGHGSDTH 233
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = -3
Query: 772 SAGVVDYPRTA*ALLTKTSRTNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SL 593
+A +V+ TA A+ T+ TTA TTT V A T A A++ + T ++
Sbjct: 1197 TAAMVEATTTAAAVTASTASVVTTTAEKATTTTAAMVEATTTEAAVTASTASVVTTTATI 1256
Query: 592 TRD--GTPWSTATSCGSATDRILSKSTS 515
TP +A S +A+ +S +T+
Sbjct: 1257 ASSTITTPSLSAISTTTASSVQVSAATN 1284
>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1898
Score = 29.9 bits (64), Expect = 2.4
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = -2
Query: 446 LKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMS---- 279
L+ GST S++ IA +T L S F R Y AH T Y YL +S
Sbjct: 868 LESGSTLLASDDGIAPNKRTKVYTSLSSDVFY------RFYVYAHTT-YTTYLCLSVNAP 920
Query: 278 -TSTCNCNARDRVV 240
T C N+RDRV+
Sbjct: 921 CTQACRLNSRDRVL 934
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = +2
Query: 683 HR*GCCCTVCPRGL--GKKGSCCP 748
H+ G C VCPRG+ KG C P
Sbjct: 4552 HKNGFLCVVCPRGMYGNSKGECSP 4575
>SB_9107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -1
Query: 183 VRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRW 82
V +RRP IQR L + DR+ LGR Q RW
Sbjct: 9 VIRRRPGGKAFTCIQRFLSSTNDRDLLGRQQSRW 42
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = +2
Query: 578 CSVSCQ*SDC*LHFERCCPGLGSRIPSSYV-QHCRSHR*GCCCTVCPRGLGKKGSCCPRI 754
CS SC+ DC + +CC S P S HC + CC + G + CP
Sbjct: 1350 CSESCK-PDCPI---KCCSNALSSCPQSCSGDHCGAECPTQCCLLADNGQHSSTASCPSA 1405
Query: 755 VHDAGAGSE 781
+G +
Sbjct: 1406 CSPSGCNPD 1414
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/54 (25%), Positives = 21/54 (38%)
Frame = +2
Query: 545 CRPTACSSTPWCSVSCQ*SDC*LHFERCCPGLGSRIPSSYVQHCRSHR*GCCCT 706
C+ CS++ C SC C L+ + + V C+S G CT
Sbjct: 224 CQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCT 277
>SB_8264| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-06)
Length = 309
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 156 LQPRIQRCLGA-RYDRERLGRPQGRWT 79
LQPRI RC GA RYD + R GR T
Sbjct: 210 LQPRISRCPGARRYDMHK-ARESGRET 235
>SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1806
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -2
Query: 521 YFPLSFRLIMAGN--YVKLIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFIT 348
YFP RLI + NY LA+ LG + + S + G+ VD+ W F
Sbjct: 1387 YFPHMARLIDGQKPWCMSSSSSNYWLAIDLGVSVDVSAVEVK-GNDVDEDINQWIWDFSV 1445
Query: 347 LWENNRVYFKAH 312
+ N+ V +K H
Sbjct: 1446 EYSNDYVQWKQH 1457
>SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +2
Query: 515 GSTF*QYPVRC--RPTACSSTPWCSVSCQ*SDC*LHFERCCPGLGSRIPSSYVQHCRSHR 688
GST Q+ R R AC +P C + C R C G +P+ +C SH
Sbjct: 54 GSTGTQFTTRTVTRQPACGGSP-CPTLRKAQPC----NRFCHNGGMPVPNQC--YCSSHY 106
Query: 689 *GCCCTVCPRGLGKKGS 739
G CC + G GS
Sbjct: 107 RGRCCEIVHGGWSTWGS 123
>SB_6979| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Frame = -2
Query: 734 PSYQDLEDKLYNSILTGDYDSAVRKSLEYESQ---GQGSIVQN--VVNNLIIDKRRNTME 570
P + + + KLY I TG+YD + L + G G +++ +VN + + + E
Sbjct: 133 PFWDEDQHKLYAQIKTGNYDDLINMMLTVDQSKRIGAGEALKHPWIVNRERVASKVHRQE 192
Query: 569 YCYKLWVGNGQDIVKKYFPLSFRLIMAG 486
L N + +K PL R++ G
Sbjct: 193 TLDGLKKFNARRKLKVNGPLLIRMVKDG 220
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,343,870
Number of Sequences: 59808
Number of extensions: 495846
Number of successful extensions: 1781
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1780
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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