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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a02r
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)             32   0.57 
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)               30   2.3  
SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)                 30   2.3  
SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                30   2.3  
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)                30   2.3  
SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)                 30   2.3  
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)                    30   2.3  
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)          30   2.3  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     29   3.0  
SB_19217| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2)                  29   4.0  
SB_47225| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_56854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_47005| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_24712| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)                      28   9.3  
SB_12593| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_50077| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_2018| Best HMM Match : AIRC (HMM E-Value=5.1)                       28   9.3  

>SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)
          Length = 782

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 24/94 (25%), Positives = 40/94 (42%)
 Frame = -3

Query: 350 RLMLPRGTEGGFPFQLFVFVYPFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPN 171
           R  L   + G +P QL + V PF  KG    P++    +   + F + R          N
Sbjct: 333 RRWLSEPSYGYWPQQLNLAVCPFTQKGN---PYKKAAFERLCIEFGMSRKPDFRWKGGRN 389

Query: 170 MYFKDIFIYHEGERFPYKFNIPSYDTQSNVVPKN 69
               D+F+++ GE +     I  YDT ++  P +
Sbjct: 390 HGLGDVFVFYPGEGYRNVHVIRGYDTAADEYPSH 423


>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
 Frame = -3

Query: 746 DASXSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDAVVKIFLAPKYDDN 567
           D   SV      +  +    ++++  ++    +   I V   V S   + I     Y  +
Sbjct: 275 DTGSSVSIIPRNVYESTCKHLELKPAKVKLRTYGSEIIVPMGVVSARTLVITTNAMYVVD 334

Query: 566 GIPLTLED-NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           G  + L   +W++ F+L+W + KL  G+N  + +  E
Sbjct: 335 GPRVALFGRSWLRLFKLEWPSIKLVQGKNTALSDLTE 371



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
 Frame = -3

Query: 746  DASXSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDAVVKIFLAPKYDDN 567
            D   SV      +  +    ++++  ++    +   I V   V S   + I     Y  +
Sbjct: 758  DTGSSVSIIPRNVYESTCKHLELKPAKVKLRTYGSEIIVPMGVVSARTLVITTNAMYVVD 817

Query: 566  GIPLTLED-NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
            G  + L   +W++ F+L+W + KL  G+N  + +  E
Sbjct: 818  GPRVALFGRSWLRLFKLEWPSIKLVQGKNTALSDLTE 854


>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 918

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 219 SWLRLFKLDWPSMKLVEGKNTALSDLTE 246


>SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
          Length = 425

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 377 SWLRLFKLDWPSIKLVQGKNTALSDLTE 404


>SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 76  SWLRLFKLDWPSIKLVQGKNTALSDLTE 103


>SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1108

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = -3

Query: 287 PFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNI 108
           PF  KG    P++    +   + F L R          N    D+F+++ GE +     I
Sbjct: 155 PFTQKGN---PYKKAAFERLCIEFGLPRKPDFRWKGGRNHGLDDVFVFYPGEGYRNMHVI 211

Query: 107 PSYDTQSNVVPKN 69
           P YDT ++  P +
Sbjct: 212 PGYDTAADEYPSH 224


>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2309

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 293 SWLRLFKLDWPSIKLVQGKNTALSDLTE 320


>SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)
          Length = 877

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 76  SWLRLFKLDWPSIKLVQGKNTALSDLTE 103


>SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 797

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 287 SWLRLFKLDWPSIKLVQGKNTALSDLTE 314


>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
          Length = 522

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 164 SWLRLFKLDWPSIKLVQGKNTALSDLTE 191


>SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 15  SWLRLFKLDWPSIKLVQGKNTALSDLTE 42


>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
          Length = 1122

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 399 SWLRLFKLDWPSIKLVQGKNTALSDLTE 426


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 467 SWLRLFKLDWPSIKLVQGKNTALSDLTE 494



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542  NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
            +W++ F+LDW + KL  G+N  + +  E
Sbjct: 1117 SWLRLFKLDWPSIKLVQGKNTALSDLTE 1144


>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
          Length = 837

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 143 SWLRLFKLDWPSMKLVEGKNTALSDLTE 170


>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
          Length = 1217

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 176 SWLRLFKLDWPSIKLVQGKNTALSDLTE 203


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -3

Query: 323 GGFPFQLFVFVYPFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFK-DIFI 147
           G +P QL   V PF  KG    P++    +   + F L R   D  +K    +   D+F+
Sbjct: 376 GYWPQQLNFAVCPFTQKGN---PYKKAAFERLCIEFSLPRKP-DFRWKGGRNHGPGDVFV 431

Query: 146 YHEGERFPYKFNIPSYDTQSNVVPKN 69
           ++ GE +     I  YDT ++  P +
Sbjct: 432 FYPGEGYRNVHVILGYDTAADEYPSH 457


>SB_19217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/85 (28%), Positives = 36/85 (42%)
 Frame = -3

Query: 323 GGFPFQLFVFVYPFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIY 144
           G +P QL   V PF  KG    P++  V +   + F L R          N    D+F++
Sbjct: 238 GYWPQQLNFAVCPFTQKGN---PYKKAVFERLCIEFGLPRNPDFRWKGGRNHGLGDVFVF 294

Query: 143 HEGERFPYKFNIPSYDTQSNVVPKN 69
           + GE       I  YDT ++  P +
Sbjct: 295 YPGEGNRNVHVIRGYDTAADEYPSH 319


>SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = -3

Query: 287 PFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNI 108
           PF  KGK   P++    +   + F L R     L    N    D+F+++ GE +     I
Sbjct: 203 PFTQKGK---PYKKAAFERLCIEFGLPRKPDFRLKGGRNHGLGDVFVFYPGEGYRNVHVI 259

Query: 107 PSYDTQSNVVPKN 69
             YDT  +  P +
Sbjct: 260 RGYDTAMDEYPSH 272


>SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2)
          Length = 419

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 349 SWLRLFKLDWPSIKLVQGKNIALSDLTE 376


>SB_47225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = -3

Query: 287 PFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNI 108
           PF  KG    P++    +   + F L R          N    D+F+++ GER+     I
Sbjct: 186 PFTQKGN---PYKKAAFERLCIEFGLPRKPDFRWKGGRNHGLGDVFVFYPGERYRNVHVI 242

Query: 107 PSYDTQSNVVPKN 69
             YDT ++  P +
Sbjct: 243 RGYDTAADEYPSH 255


>SB_56854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 208 IAPLLMHYSRFLTCISRIFSFTTRVNGSLTNSIFLRMTHS 89
           I PL+      L C+S +   T  ++GSL++ +  ++TH+
Sbjct: 45  ILPLVPRPKELLECVSNMRLLTWLLHGSLSHMVHSKITHA 84


>SB_47005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = -3

Query: 287 PFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNI 108
           PF  KG    P++    +   + F L R  V       N    D+F+++ GE +     I
Sbjct: 177 PFTQKGN---PYKKAAFERLCIEFGLPRKQVFRWKGGRNHGLGDVFVFYPGEGYCNVHVI 233

Query: 107 PSYDTQSNVVPKN 69
             YDT ++  P +
Sbjct: 234 RGYDTAADEYPSH 246


>SB_24712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = -3

Query: 287 PFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNI 108
           PF  KG    P++    +   + F L R +        N    D+F+++ GE +     I
Sbjct: 179 PFTQKGN---PYKKAAFERLCIEFGLPRKLDFRWKGGRNHGLGDVFVFYPGEGYRNVHVI 235

Query: 107 PSYDTQSNVVPKN 69
            SYDT ++  P +
Sbjct: 236 CSYDTAADEYPSH 248


>SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)
          Length = 842

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = -3

Query: 287 PFDNKGKDL--APFESFVLD-NKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYK 117
           PF  KG     A FE   ++   P G P++R          N    D+F+++ GER    
Sbjct: 132 PFTQKGNPYKKAAFERLCIEFGLPPGLPMERR--------RNHGLGDVFVFYPGERCRNV 183

Query: 116 FNIPSYDTQSNVVPKN 69
             I  YDT ++  P +
Sbjct: 184 HVIRGYDTAADKYPSH 199


>SB_12593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 158 DIFIYHEGERFPYKFNIPSYDTQSNVVPKN 69
           D+F+++ GE +     IP YDT ++  P +
Sbjct: 259 DVFVFYPGEGYRNVHVIPGYDTAADEYPSH 288


>SB_50077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 907

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = -3

Query: 287 PFDNKGKDL--APFESFVLD-NKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYK 117
           PF  KG     A FE   ++   P G P++R     L         D+F+++ GE +   
Sbjct: 128 PFTQKGNPYKKAAFERLCIEFGLPPGLPMERRAEHGL--------GDVFVFYPGEGYRNV 179

Query: 116 FNIPSYDTQSNVVPKN 69
             I  YDT ++  P +
Sbjct: 180 HVIRGYDTAADEYPSH 195


>SB_2018| Best HMM Match : AIRC (HMM E-Value=5.1)
          Length = 298

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 158 DIFIYHEGERFPYKFNIPSYDTQSNVVPKN 69
           D+F+++ GE +     IP YDT ++  P +
Sbjct: 253 DVFVFYPGEGYRNVHVIPGYDTAADEYPSH 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,926,668
Number of Sequences: 59808
Number of extensions: 504171
Number of successful extensions: 1452
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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