Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a10r
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42139| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_13190| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_21894| Best HMM Match : PWP2 (HMM E-Value=1)                        28   8.5  

>SB_42139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -3

Query: 610 HWDDDSRYGGNSSRH--YNQK 554
           HW+D +R+GGN   H  YN K
Sbjct: 25  HWEDQARFGGNYQAHAQYNHK 45


>SB_13190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -3

Query: 562 NQKELEFHQKQIQFITKSSK*TFSYNC*WDHSR-RSASARKVTCLNI--AFKNVPCRYLY 392
           N     FH K   F ++S+  +  Y C       R  S   +TC  +  AF NVP R  +
Sbjct: 134 NNMHTRFHWKLQPFPSRSTPYSLKYLCFAGRRCFRQVSIEILTCNQVRHAFMNVPSRDRH 193

Query: 391 RSKG 380
           +S+G
Sbjct: 194 KSRG 197


>SB_21894| Best HMM Match : PWP2 (HMM E-Value=1)
          Length = 249

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 529 SVSDGTPILFDCNAC 573
           S SD TP+LFDC  C
Sbjct: 30  SGSDSTPVLFDCRRC 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,436,799
Number of Sequences: 59808
Number of extensions: 327498
Number of successful extensions: 785
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)