Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a07r
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6937| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_19910| Best HMM Match : C1_4 (HMM E-Value=3.2)                      28   9.8  

>SB_6937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 294 RLKMLRNHGLIQNNFTRLCKSMVTLDST 377
           R K L NH L Q  FTRL K+ V  + T
Sbjct: 21  RCKELENHKLYQGLFTRLLKAEVRAEKT 48


>SB_19910| Best HMM Match : C1_4 (HMM E-Value=3.2)
          Length = 201

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = +3

Query: 171 HFKLLNSF*RILNT*FYSMRLIKLYLNFLTNCYNLCF*CSNRLKMLRNHGLIQNNFTRLC 350
           HF  +NS   +L   +Y     K Y      C NLC+ C   L    +    Q   TRL 
Sbjct: 69  HFDYINSMPGMLGRCYYCTSCQKGYDRRNHKCNNLCYGCVLTLNRHESEDSTQRMRTRLH 128

Query: 351 KS 356
           K+
Sbjct: 129 KA 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,618,333
Number of Sequences: 59808
Number of extensions: 275786
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)