Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a07f
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31358| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                29   3.9  
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)                28   5.1  
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)          28   6.8  
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 27   9.0  

>SB_31358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 581

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 390 SPSKNAKMEEDKQNQVILQNNVEGNDEVQVDTIEADKSDMTSSRRSSTAPD 542
           SPS+ A+  +D      +    E   E Q       + + TSSRRSSTA D
Sbjct: 207 SPSQTAQESQDPPEHTPIGQPTESQSE-QTQGESTTEPEETSSRRSSTATD 256


>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +3

Query: 372 SLKTPTSPSKNAKMEEDKQNQVILQNNVEGNDEVQVDTIEADKSDMT-SSRRSST 533
           S + P  PSK  K+ +D QN+  L + ++G +  ++ +    K D+  +SR+SST
Sbjct: 390 SKRPPPPPSKKLKLRDDNQNKCPLPHALQG-ELARLCSRFTVKPDLAGASRQSST 443


>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
          Length = 2293

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +3

Query: 396 SKNAKMEEDKQNQVILQNNVEGNDEVQVDTIEADKSDMTSSRRSSTAPDIVRGVDFQYTE 575
           SK+  M +DK+      ++ +GNDE   +   +DK D      SS   D   G   ++ +
Sbjct: 473 SKDHYMNKDKEENRANSDD-DGNDESGNEKTNSDKKDGNDEGLSSKNNDEKYGEGNKHED 531

Query: 576 HELASHK 596
            EL S+K
Sbjct: 532 TELKSNK 538


>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
          Length = 286

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/64 (21%), Positives = 32/64 (50%)
 Frame = -2

Query: 371 KLTFIKIYAVYSIV*ILFLINGCLIFIWLGFH**FNSFYIRIFYVLVFTLIGSFARFNSF 192
           K T + + A++ ++ IL + +G  IF+ L F      ++    ++L    +  F  F+ +
Sbjct: 25  KYTLLFVNAIFCVLGILLMFDGIYIFLRLKFENELTDWFKLQSFMLYMPTLLFFTGFSLY 84

Query: 191 QVIF 180
            ++F
Sbjct: 85  LIVF 88


>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1841

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
 Frame = -2

Query: 593  VRGQFMFCILKINTSH--YVRSSTTPST-----TCHITLVCF 489
            + G F+ C+  IN ++  +  S+ TPS      TCHIT  CF
Sbjct: 1066 IGGDFVGCVWNINFNNELFDPSTLTPSEYMEVGTCHITNFCF 1107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,701,999
Number of Sequences: 59808
Number of extensions: 320713
Number of successful extensions: 734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)