Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_C07
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21) 105 2e-23
SB_26711| Best HMM Match : I-set (HMM E-Value=0) 32 0.43
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12) 29 3.0
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) 29 3.0
SB_4210| Best HMM Match : JTB (HMM E-Value=5.8) 29 3.0
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 27 9.3
SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05) 27 9.3
>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
Length = 147
Score = 105 bits (253), Expect = 2e-23
Identities = 48/75 (64%), Positives = 62/75 (82%)
Frame = +3
Query: 393 TLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAITKKMCEIITRDVTN 572
TLIEA +DV TTDGY+LR+FCIGFT + +KT YA+HTQ++AI KKM +IITR+V+
Sbjct: 2 TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61
Query: 573 SELREVVNXLIPDSI 617
++L+EVVN LIPDSI
Sbjct: 62 NDLKEVVNKLIPDSI 76
>SB_26711| Best HMM Match : I-set (HMM E-Value=0)
Length = 327
Score = 31.9 bits (69), Expect = 0.43
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 81 EEXCRPIHSQRLVRCQGSALCSARGKSAPRLSTVPXATKIASEGLKGRVFEVSLADLQAD 260
E C I + ++ +GS C R + LST +G +G FE L D++ +
Sbjct: 61 ESSCTLIIQEAIINDEGSYRCVVRNELGSALSTAEVLVNEREKG-EGPRFEERLRDVRVE 119
Query: 261 TDAERSFR 284
E SF+
Sbjct: 120 IGREASFK 127
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 225 VFEVSLADLQADTDAERSFRKFRLIAEYVQ 314
+F + +D+QA+++ FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205
>SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)
Length = 924
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = -2
Query: 427 VVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACR 248
V T + + + C F T+ SL R + ++R + N L +++A R
Sbjct: 101 VFVTDLRSKAKTCEFGTLQDSLIKDRIVCGIDSDSIR----ERLLRNTELTLDTAINAVR 156
Query: 247 SARETSKTLPFNPSEAIFVALGTVDKRG 164
+A ETSKT N + +A G ++KRG
Sbjct: 157 AA-ETSKTQIENLKDGASLAAGALNKRG 183
>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
Length = 1102
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -2
Query: 412 MLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSA--SVSACR 248
++ SM +C ++ + +SL R + + +L PC Y ++++L + + S+S CR
Sbjct: 948 VVMSMSLCRYVHVVMSLCPCRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCR 1004
>SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)
Length = 427
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Frame = +3
Query: 108 QRLVRCQGSALCSARGKSAPRLSTVPXATKIASEGLKGRVFEVSLADLQADTDAERSF-- 281
Q V C G + + R T +A + + + +AD +++ D ER+
Sbjct: 159 QTKVNCHGGSEFHGGSEIHSRPLTKDSGLMVALKSQSSSICKFKMADSESE-DQERTIIT 217
Query: 282 RKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 389
+ FRL Y +L HG++++ L+ +K W
Sbjct: 218 QLFRLGHSYDDIVGLLSKCHGINISVRTLKRRLKDW 253
>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 286 LRKDLSASVSACRSARETSKTLPFNPSEAIFV 191
LRK L S + RE + L FNP E+ +V
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYV 333
>SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 328 STLRPCTYSAINLNLRKDLSASVSACRSARETSKTLPFNPSEAIF 194
S LR Y AI + L D + ++T P+NP++A+F
Sbjct: 331 SVLRAAMYGAIAVLLYPDPEITSKLGTRPQDTFPNTPWNPADAVF 375
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 240 GKLRKLFPSILPKQFSLXWVRLTSVVPTCLLLNIER 133
GK+ + P LP++ + R SV+ C+LL + R
Sbjct: 226 GKVVRSLPKNLPRRVKVMIARAWSVLACCILLRVAR 261
>SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)
Length = 340
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 231 EVSLADLQADTDAERS--FRKFRLIAEYV-QGRNVLCNFHGMDLTTDKLRWMVKKWQTL 398
E+ A L+ D D+ + F +F +A + QG+ ++ NF + TD + + V W TL
Sbjct: 186 EIKEAMLEVDVDSSGTVDFFEFLCVARLITQGKALVNNFQLSIVQTDGITFDVFDWSTL 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,196,797
Number of Sequences: 59808
Number of extensions: 388937
Number of successful extensions: 965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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