Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B10
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_57657| Best HMM Match : PHD (HMM E-Value=0.0012)                    28   7.6  

>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = -1

Query: 296 VLLGLFNWGDLFLFSGIPINEMCKYAFIISLPLLLVFIFH 177
           ++LG  N G+L +F+ I   E+C+  F+  L LLL+ +FH
Sbjct: 808 IILGTQN-GELKMFNIIS-GEVCRCLFMGKLVLLLMVVFH 845


>SB_57657| Best HMM Match : PHD (HMM E-Value=0.0012)
          Length = 363

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 418 YFSNCTRIRNRMTNKISNSSITW 486
           Y +NC  I N   N ++NSS +W
Sbjct: 76  YHTNCCSISNESYNTLANSSCSW 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,100,889
Number of Sequences: 59808
Number of extensions: 269582
Number of successful extensions: 1527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)