Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A21
         (883 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)                     29   3.8  
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)               29   5.0  
SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7)           29   5.0  

>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 132 KAHRNGIKKPRKTRHESTLGM 194
           K HRNGIKKPR  R+ S  G+
Sbjct: 175 KWHRNGIKKPRTNRYPSLKGV 195


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 84  IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQR 221
           IK     N   HNQ   + +   KK RK RH      DP+ L+ ++
Sbjct: 123 IKQTSDNNKPQHNQKNTSKK---KKKRKDRHRKKQDQDPEPLKEKK 165


>SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 803

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 52  LSSESKWIENASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPP 186
           + +E  W E A KW    +  +ITKT+  T  V      PG N P
Sbjct: 634 IKAECTWDEEAGKWNMPEL--VITKTSLPTPGVMPGGLTPGGNTP 676


>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
          Length = 413

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 87  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 185
           K AKSK   NH ++ K  R   KK ++T  +ST
Sbjct: 145 KNAKSKIKRNHGEDNKPKRISTKKRKRTDKDST 177


>SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7)
          Length = 192

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 93  AKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 197
           +K+ N TN NQ         K P+KT  ++T+  D
Sbjct: 153 SKNNNQTNRNQGNTGITENTKSPKKTNIDATVPSD 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,504,437
Number of Sequences: 59808
Number of extensions: 209060
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)