Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A16
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)          29   3.9  
SB_22230| Best HMM Match : CARD (HMM E-Value=3.8e-17)                  28   5.2  
SB_17774| Best HMM Match : F5_F8_type_C (HMM E-Value=0.066)            28   5.2  
SB_40389| Best HMM Match : DUF590 (HMM E-Value=0)                      27   9.1  
SB_32514| Best HMM Match : VWA (HMM E-Value=0.32)                      27   9.1  

>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
 Frame = +2

Query: 224 INLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKTEK-----VRELS 388
           + LLG V  V + ++ +S+P  L G V   HI +   KL+ A  +  TE+     +  L 
Sbjct: 1   MKLLGAVKEVGEFELIISLPNGLSGFV---HILDINEKLMSALAKSSTEERIEDSIPSLG 57

Query: 389 QMFKPGQYIAVSVVELAPGN-----TMLTTMPQHVNSGKRHTDIXKGAIFQAXVSSXEXH 553
            +F     +   V EL           L+  P+ VN+G   T I  G +    VSS E H
Sbjct: 58  DLFTVNSLVVCVVKELLGSKHGHRKVKLSLRPEDVNAGV--TTIVPGFVLPGCVSSVEDH 115

Query: 554 GYVMDLGIPNTTAFLPXK 607
           GYV+  GIP  T FL  K
Sbjct: 116 GYVLSFGIPGKTGFLSKK 133


>SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)
          Length = 581

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
 Frame = +2

Query: 140 SDEAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSD-VKIKVSMPCKLLGNVMACH 316
           S+  + Y+  HK+NN+L     + +   I+ +       D  +I   +P KL G + A H
Sbjct: 389 SNSIKQYMNNHKVNNDL----QERVISWIDYMWHKKRSLDHERILEKLPEKLRGQI-AVH 443

Query: 317 ISESYNKLLEAYVEDKTEKVREL-----SQMFKPGQYI 415
           +  +  + +  + + +   +RE+     SQ+F PG YI
Sbjct: 444 VYLAVLRQVPVFADCEPGLLREIVVKLRSQVFSPGDYI 481


>SB_22230| Best HMM Match : CARD (HMM E-Value=3.8e-17)
          Length = 555

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 490 FPTVYVLRHSRQHGVA 443
           FPTVY LRH R +G++
Sbjct: 458 FPTVYTLRHGRDNGLS 473


>SB_17774| Best HMM Match : F5_F8_type_C (HMM E-Value=0.066)
          Length = 220

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 490 FPTVYVLRHSRQHGVA 443
           FPTVY LRH R +G++
Sbjct: 123 FPTVYTLRHGRDNGLS 138


>SB_40389| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 320

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -1

Query: 475 VLRHSRQHGVARCQFHYTHSYVLTRFEHL*QFTNFFSLIFNISF 344
           +L H   H   R Q  Y  +  L  F  + QFTNF+S IF I+F
Sbjct: 57  LLNHWEMH---RTQTEYEDNLTLKVF--IFQFTNFYSSIFYIAF 95


>SB_32514| Best HMM Match : VWA (HMM E-Value=0.32)
          Length = 136

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
 Frame = +2

Query: 161 LKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHI------S 322
           L+T   N+N   +   ++ P I      IH       VSM  +L+G  MAC +       
Sbjct: 9   LQTFTGNSNRNSVVRNAVSPAIEARFVRIHPKSWHNHVSMRVELIGCFMACKVDVGILMD 68

Query: 323 ESYNKLLEAYVEDKTEKVRELSQMFK-PGQYIAVSVVELAPGNTMLTTMPQHVNSG 487
           ES +   + + ++K E V++L + F+  GQY    V+  +    +   +  H + G
Sbjct: 69  ESGSVKQDDFTKEK-EFVKDLVRHFQIGGQYAQFGVISFSTHAHLDIALNSHSSVG 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,024,931
Number of Sequences: 59808
Number of extensions: 342304
Number of successful extensions: 741
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)