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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A13
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)                 54   1e-07
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 53   2e-07
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)               51   8e-07
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)                 47   1e-05
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)               47   1e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)                        47   2e-05
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  45   7e-05
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       44   9e-05
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)                  42   4e-04
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)                        42   5e-04
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)                 40   0.003
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)                       39   0.004
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)                 39   0.004
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)                 38   0.008
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.010
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.010
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)                 36   0.031
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.041
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.041
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)                 35   0.054
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.054
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.072
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)                       34   0.095
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               34   0.13 
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)                 33   0.22 
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)                33   0.22 
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)                 32   0.38 
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)                       32   0.38 
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                32   0.38 
SB_13046| Best HMM Match : La (HMM E-Value=5e-23)                      31   0.89 
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)                 30   1.5  
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)                  30   2.0  
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)                 29   3.6  
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)                 29   3.6  
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)             28   8.3  
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)                 28   8.3  
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
          Length = 304

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +3

Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
           ++T+ + NLS  T E  + EL+   G I R+ +  DK+     GF F+ +  REDA   +
Sbjct: 180 TATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAI 239

Query: 390 RYINGTRLDDRIIRCDW 440
             ++G   D  I+  +W
Sbjct: 240 EVLSGFGYDHLILNVEW 256


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/74 (32%), Positives = 43/74 (58%)
 Frame = +3

Query: 216 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 395
           ++++GN+ +  +EEQ+ E++S  G +    +  D+    P G+ F EY  +E A + MR 
Sbjct: 26  SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85

Query: 396 INGTRLDDRIIRCD 437
           +NG  L+ R +R D
Sbjct: 86  LNGYELNGRALRVD 99


>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 22/79 (27%), Positives = 44/79 (55%)
 Frame = +3

Query: 198 LLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA 377
           L  + ST+Y+GNL +  T   +++++ R G + +V +  DK  +   G  F+ +  R+ A
Sbjct: 5   LAPSKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSA 64

Query: 378 ENCMRYINGTRLDDRIIRC 434
           +N +  +N  ++  R I+C
Sbjct: 65  QNAVAAVNKKQMFGRTIKC 83


>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 24/80 (30%), Positives = 44/80 (55%)
 Frame = +3

Query: 165 HFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGF 344
           H  G++S+         TLY+ N+ +   +E I  L+ +CG + +V +  D  ++   GF
Sbjct: 263 HMNGNKSQAPP----GCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGF 318

Query: 345 CFVEYYAREDAENCMRYING 404
           CFV    +E+A+N ++ +NG
Sbjct: 319 CFVTMATQEEAQNAIQTLNG 338



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/82 (18%), Positives = 38/82 (46%)
 Frame = +3

Query: 186 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 365
           E ++  ++ +TL +  +    T++    ++     +    +   K      GF FV+Y  
Sbjct: 38  EPQEAQESKTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNT 97

Query: 366 REDAENCMRYINGTRLDDRIIR 431
            EDA+  +  +NG  + +++++
Sbjct: 98  TEDAQKAIDKLNGFTIGNKVLK 119


>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
          Length = 201

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 28/95 (29%), Positives = 48/95 (50%)
 Frame = +3

Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
           ++ LY+GNL       ++   + + G + +V +      + P GF FVEY    DAE  +
Sbjct: 3   TTKLYVGNLGRNADSSELERAFEKFGRLSKVWVA-----RNPPGFAFVEYEDYRDAEEAV 57

Query: 390 RYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 494
           R ++G  + DR IR ++ +    GR  G G+  G+
Sbjct: 58  RELDGANVCDRTIRVEF-SNNRGGRDRGGGRPRGR 91


>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/81 (29%), Positives = 44/81 (54%)
 Frame = +3

Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
           L++ N+     E+ I+EL+S  G+I+ + + LD+      G+  VEY   ++A++ +  +
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354

Query: 399 NGTRLDDRIIRCDWDAGFIEG 461
           NG  +  + I  DW   FI G
Sbjct: 355 NGAEMLGQNISVDW--AFIRG 373


>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 593

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 26/111 (23%), Positives = 52/111 (46%)
 Frame = +3

Query: 99  YKMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYS 278
           Y M++S   + +  +    +  +   + +++++ L     +Y+G+++F   EE I   + 
Sbjct: 64  YAMEQSVQQVLAKQQALQAQQMNALQTAAQKQRALALMCRVYVGSINFELREEHIRTAFH 123

Query: 279 RCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIR 431
             G I ++ +  D       GF FVEY   E A+  +  +NG  L  R I+
Sbjct: 124 PFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIK 174


>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/67 (29%), Positives = 39/67 (58%)
 Frame = +3

Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
           ++L + NL++ TT E + +++ + GD+  + +  D+      GF FV +Y + DAE+ M 
Sbjct: 16  TSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMD 75

Query: 393 YINGTRL 413
            ++ T L
Sbjct: 76  CMDATCL 82


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
 Frame = +3

Query: 177  SRSEQEKLLKASST-----LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCG 341
            SRS   +  K S T     LY+ +L+    ++ + E++S  G ++ V +  D+      G
Sbjct: 1140 SRSRSPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRG 1199

Query: 342  FCFVEYYAREDAENCMRYINGTRLDDRII 428
            F +VEY   E+ E  +++++G ++D + I
Sbjct: 1200 FAYVEYVDPEECEKALKHMDGGQIDGQEI 1228


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 22/73 (30%), Positives = 41/73 (56%)
 Frame = +3

Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
           +T+Y+G L    +E  I+EL+ + G +  V M  D+  +   G+ FVE+   EDA+  ++
Sbjct: 13  ATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIK 72

Query: 393 YINGTRLDDRIIR 431
            +N  ++  + IR
Sbjct: 73  VMNMIKVYGKPIR 85


>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = +3

Query: 222 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 401
           YIGNL F   E  + + +SR  D+  V +  D+  + P GF FV + ++++ E+ +  ++
Sbjct: 233 YIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELD 291

Query: 402 GTRLDDRIIRCDWDAGFIEGRQYGRG 479
           G   D R ++ +  A   E R  GRG
Sbjct: 292 GQEFDGRSMKVN-QARSREQRGGGRG 316


>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = +3

Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRR---VIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
           L+IGNL    +E  I ++  + G+I     +  G    +  P G+CFVE+  +EDA   +
Sbjct: 389 LWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKAL 448

Query: 390 RYINGTRLDDRIIRCDW 440
           R +N   +  R +  DW
Sbjct: 449 RGLNKKIVLSRALVVDW 465


>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
          Length = 328

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 18/54 (33%), Positives = 34/54 (62%)
 Frame = +3

Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
           L++G LS+ TT+E + E +S+ G++  V + +D     P GF FV++  + +A+
Sbjct: 31  LFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEAD 84


>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 1026

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 27/100 (27%), Positives = 48/100 (48%)
 Frame = +3

Query: 90  EQVYKMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYE 269
           E V  M +  ++   S E  +  D +   S+  +   +K   T++I NLSF +T++ I  
Sbjct: 377 EDVKHMSKDDNNNEKSDEDDASEDDNH--SQRSKPSDVKEGLTVFIRNLSFDSTQKNITN 434

Query: 270 LYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
           L+ + GDI    + +D   +   G  FV+Y + E    C+
Sbjct: 435 LFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCL 474



 Score = 35.5 bits (78), Expect = 0.041
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +3

Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKY--KKTPCGFCFVEYYAREDAENC 386
           S L I NL+F  TE  + E +S  G++    +   K   +    GF FV++    DA   
Sbjct: 247 SRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKA 306

Query: 387 MRYINGTRLDDRIIRCDW 440
           +  +N  ++  R +  DW
Sbjct: 307 LEEMNAKKILGRPVAVDW 324


>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/71 (30%), Positives = 39/71 (54%)
 Frame = +3

Query: 216 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 395
           TL++ NL F   E +I EL+S+ G +++V +  ++  K P G+ +VEY     A   +  
Sbjct: 172 TLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGK-PKGYGYVEYEQESSASTAVLT 230

Query: 396 INGTRLDDRII 428
           ++ T +  R I
Sbjct: 231 LDKTEVKGRTI 241


>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
          Length = 159

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 22/67 (32%), Positives = 35/67 (52%)
 Frame = +3

Query: 222 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 401
           YIGNLS+   E+ + E +  C D+  V +  D+    P GF FV + ++E+ E  +   +
Sbjct: 8   YIGNLSYSVDEQALEEKFHGC-DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFD 66

Query: 402 GTRLDDR 422
           G   D R
Sbjct: 67  GQDFDGR 73


>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 514

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 22/85 (25%), Positives = 40/85 (47%)
 Frame = +3

Query: 177 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 356
           + +E+ K     + LY+G+L F  TE  +  ++   G +  V +  D       G+ FV+
Sbjct: 230 AEAERLKQPLGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQ 289

Query: 357 YYAREDAENCMRYINGTRLDDRIIR 431
           +   E A+  M  +NG  L  R ++
Sbjct: 290 FREAEAAKRAMEQMNGFELAGRPLK 314


>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
          Length = 507

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 27/91 (29%), Positives = 45/91 (49%)
 Frame = +3

Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
           +Y+GNL     E+ +++++ + G I  V +   +    P  F FVE+    DAE+ ++  
Sbjct: 263 VYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPP--FAFVEFEDPRDAEDAVKGR 320

Query: 399 NGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 491
           +G   D   IR ++  G   GR  G G  GG
Sbjct: 321 DGHEFDGYRIRVEFPRGG-SGRGGGGGGGGG 350


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = +3

Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
           ++IG L  Y  E+Q+ EL S  G++R   +  D       G+ F EY      +  ++ +
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGL 734

Query: 399 NGTRLDDR 422
           NG +L D+
Sbjct: 735 NGMQLGDK 742


>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
          Length = 407

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 22/89 (24%), Positives = 43/89 (48%)
 Frame = +3

Query: 165 HFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGF 344
           H +   +  +K      +++IGNL F   EE + EL++ CG++  V +  D+      GF
Sbjct: 40  HIRVDLASNDKAHDHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGF 99

Query: 345 CFVEYYAREDAENCMRYINGTRLDDRIIR 431
            +V + +++     ++ +N      R IR
Sbjct: 100 GYVLFESKDAVVFALK-MNNAEFKGRKIR 127


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = +3

Query: 186 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 365
           +  K+ +   T+++ NL    T E +   +S CGDI+ + MG D  K  P  + ++E+  
Sbjct: 63  DANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGK--PTRYAYIEFAE 120

Query: 366 REDAENCMRY 395
            +   + ++Y
Sbjct: 121 TQAIVSALQY 130


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
 Frame = +3

Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGF-CFVEYYAREDAE 380
           ++ +TLY+G L    TE+ + + + + G++R + M      +  C F CF    A E A 
Sbjct: 301 RSITTLYVGGLEGKVTEQDLRDHFYQFGELRSISM----VPRQNCAFVCFTSRAAAEAAA 356

Query: 381 NCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 491
           +  R  N   L  R ++  W  G  +G+Q   G+ GG
Sbjct: 357 D--RSFNKLILKGRRLKIMW--GKSQGQQPAPGRQGG 389


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 20/75 (26%), Positives = 38/75 (50%)
 Frame = +3

Query: 216 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 395
           +LY+GNL    T+E I  ++++   + R  M      K P  +CFVE+    DA+     
Sbjct: 370 SLYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGP--YCFVEFETHADAQEAKFR 427

Query: 396 INGTRLDDRIIRCDW 440
           ++   + D+ ++ +W
Sbjct: 428 MDQRTVMDKKLKVNW 442



 Score = 31.9 bits (69), Expect = 0.51
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
 Frame = +3

Query: 192 EKLLKASSTLYIGNLSFYTTEEQIYELYS-RCGDI---RRVIMGLDKYKKTPCGFCFVEY 359
           EKL K +S LY    SF+     + +++S    D+   R V +  D  K    GF FV +
Sbjct: 504 EKLSKPTSRLYFW--SFHEWSTFLDDIFSYTVPDLFVAREVRVVKDPAKNKSKGFGFVSF 561

Query: 360 YAREDAENCMRYINGTRLDDRIIRCDWDA 446
             REDA   +  ++   +  + ++ +W A
Sbjct: 562 VRREDAAKAIAEMDSVTIGGKQVKTNWAA 590


>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
          Length = 209

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +3

Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
           + L++  L+  TT+E +  ++SR G I    +  D+       + F+E+   ED E    
Sbjct: 120 NVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYF 179

Query: 393 YINGTRLDDRIIRCDW 440
            ++   +DDR I  D+
Sbjct: 180 KMDNVLIDDRRIHVDF 195


>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
           L +  L + TTE ++ E ++R G+I    + LD   +   GF FV +   EDA+N +
Sbjct: 117 LIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVL 173


>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 23/84 (27%), Positives = 40/84 (47%)
 Frame = +3

Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
           S +YIGN+    ++ +I   +   G +R V +      + P GF F  +  R DAE+ +R
Sbjct: 2   SRVYIGNIGDNASKREIEREFETFGPLRDVWVA-----RNPPGFAFCVFEDRRDAEDAVR 56

Query: 393 YINGTRLDDRIIRCDWDAGFIEGR 464
            ++G  +  +  R +   G   GR
Sbjct: 57  ELDGRYICGQRARVELAKGPSRGR 80


>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
          Length = 496

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = +3

Query: 183 SEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDI-RRVIMGLDKYKKTPCGFCFVEY 359
           SE EKL K    ++IG L++ TTEE + + +S+ G I   VIM  D   +   GF FV Y
Sbjct: 44  SESEKLRK----IFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSR---GFGFVTY 96

Query: 360 YAREDAENCMRYINGTRLDDRII 428
            + +     ++  +   LDDR I
Sbjct: 97  ESSDSVNEVLKKKDHV-LDDREI 118


>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +3

Query: 249 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 428
           ++E I +++   G++    +  D+      G+ FV Y   +DA   +R +NG RL ++ +
Sbjct: 39  SQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTL 98

Query: 429 R 431
           +
Sbjct: 99  K 99


>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 34.7 bits (76), Expect = 0.072
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 210 SSTLYIGNLSF-YTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
           S TL++  L   +     I EL+S+ G++    + ++       GF FV+Y   E+AE  
Sbjct: 204 SRTLFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKG 263

Query: 387 MRYINGTRLDDRIIR 431
            R  NG +++   IR
Sbjct: 264 QRAHNGRQVEGSNIR 278


>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 718

 Score = 34.3 bits (75), Expect = 0.095
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +3

Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY--AREDAENC 386
           ++LY+G+L+   TE  +YE +S  G +  + +  D   +   G+ +V +     + A   
Sbjct: 13  ASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHDAALEA 72

Query: 387 MRYINGTRLDDR 422
           +  ++G  L+D+
Sbjct: 73  IARVDGMLLNDK 84


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +3

Query: 222 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 401
           Y+G L+    E+ ++  +   GDI  V + +D       GF FVE+   ED    +  +N
Sbjct: 8   YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67

Query: 402 GTRLDDRIIR 431
            + L  R IR
Sbjct: 68  ESELFGRTIR 77


>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +3

Query: 150 SYRDQHF----KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIM 308
           S +  HF    K S  E+E L  +  TL++ N+  Y T+  I +L+ +CG ++ V +
Sbjct: 17  SCKSNHFLYFKKHSVREEESLRPSDKTLFVINVPPYCTKLAIKKLFGKCGGVKSVYL 73


>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
          Length = 168

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 14/61 (22%), Positives = 34/61 (55%)
 Frame = +3

Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
           +++G +     E+++  ++   G I  V + +D +     G+ FV Y +++DA+ C++ +
Sbjct: 76  VFVGKIPRDLYEDELVPVFETAGPIYEVRLMMD-FNGQNRGYAFVVYTSKDDAKRCVKTL 134

Query: 399 N 401
           N
Sbjct: 135 N 135


>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
          Length = 2386

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/76 (27%), Positives = 42/76 (55%)
 Frame = +3

Query: 201 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
           + AS  ++IG LS   TE  + EL+++ G ++ V++  D+  K+     FV +++ + AE
Sbjct: 520 MAASFPVWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQS-GFVHFWSSDVAE 578

Query: 381 NCMRYINGTRLDDRII 428
                +NG  +  +I+
Sbjct: 579 AANVGMNGCDILGKIV 594


>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 14/70 (20%), Positives = 34/70 (48%)
 Frame = +3

Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
           K  S ++IG +     E+++  ++  CG I    + +D       GF F  +  +++A+N
Sbjct: 149 KVCSQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQN 208

Query: 384 CMRYINGTRL 413
            ++ ++   +
Sbjct: 209 AVKKLDNKEI 218



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +3

Query: 201 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
           +K    +Y+ NLS   TEE++ E YS+ G + RV     K K     + FV +  R+ A 
Sbjct: 325 MKKVKVVYLRNLSPSITEEKLKEEYSQYGAVDRV----KKLK----DYAFVHFTERDHAL 376

Query: 381 NCMRYINGTRLD 416
             +   +G  +D
Sbjct: 377 KAIEETDGKEMD 388


>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +3

Query: 198 LLKASST-LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARED 374
           L +A  T +YIG+L    ++ +I   +   G ++ V +      + P GF F  +  R D
Sbjct: 26  LRRAEMTKVYIGSLGDNASKREIENEFGYYGPLKDVWVA-----RNPPGFAFCIFDDRRD 80

Query: 375 AENCMRYINGTRLDDRIIRCDWDAGFIEGR 464
           AE+ +R ++G  +  + +R +   G   GR
Sbjct: 81  AEDAVRELDGRYICGQRVRVELAKGPSRGR 110


>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
          Length = 623

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = +3

Query: 120 DSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRR 299
           DS+  + + +   ++   GS  E  +      TL++ NLSF +TEE + + ++  G ++ 
Sbjct: 507 DSLEKTDKDADQSEEQNAGSDEEDTE----GVTLFVKNLSFESTEEALKQKFAAVGPVKS 562

Query: 300 VIMGLDKYKKTPCG 341
             +   K  K P G
Sbjct: 563 ATIAKKKDPKKPGG 576


>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 420

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 174 GSRSEQEKLLKA--SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFC 347
           G  S ++ + K   S  L + +L F TT +++ E + +CG++  + + ++  K+T     
Sbjct: 221 GKESNEDLMAKVIQSKKLMVQDLDFDTTVDELREYFEKCGELTGIDLLINSEKRTCAAIV 280

Query: 348 F 350
           F
Sbjct: 281 F 281


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +3

Query: 228 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 407
           G L      E I  ++S  G + RV+M   +       + FV Y +  +A N MR +NG 
Sbjct: 55  GGLMCGVDRESITRVFSLYGTLERVVMLPQR------SYSFVSYKSHNNALNAMRNLNGK 108

Query: 408 RLDD 419
            LD+
Sbjct: 109 ALDE 112


>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
          Length = 442

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 17/70 (24%), Positives = 36/70 (51%)
 Frame = +3

Query: 192 EKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARE 371
           +K +K S  L    L F+   + + +++S  G +  V +   K+     GF F+E+ +++
Sbjct: 82  KKAMKLSQQLE-EKLPFHADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQ 140

Query: 372 DAENCMRYIN 401
            AE+ ++  N
Sbjct: 141 QAEHVVQMFN 150


>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1148

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/79 (25%), Positives = 39/79 (49%)
 Frame = +3

Query: 186 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 365
           +Q++  +   T++IG L     E  I E++  CG+I  + +   K +     FC + + A
Sbjct: 342 KQKEKPEGCRTVFIGGLPESINEHIINEIFYVCGEITSIRISKGKGENAR-KFCHLRFGA 400

Query: 366 REDAENCMRYINGTRLDDR 422
           +E  +  + + +G RL  R
Sbjct: 401 KESVDTAVLF-SGYRLYTR 418


>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = +3

Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
           LYIGNL+F + E +I + +   G + +V +  DK      GF FV   + +     +  +
Sbjct: 11  LYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEKM 69

Query: 399 NGTRLDDRIIRCDWDAGFIEGR-QYGRGKTGGQ 494
           N + +  R I         E R   GR + GG+
Sbjct: 70  NQSSVGGRNITVALALDKTENRGGGGRRERGGR 102


>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +3

Query: 201 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
           +  S+ +Y G L     E  + +     G +R + M L        G+ FVE+    DA+
Sbjct: 1   MSRSTRVYFGRLPRDCRERDLEKFVRGYGRVREISMKL--------GYGFVEFDDYRDAD 52

Query: 381 NCMRYINGTR-LDDRIIRC 434
           +C+  +NG   L +R I C
Sbjct: 53  DCVYDLNGRNLLGEREIAC 71


>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
          Length = 291

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +3

Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
           L++G + + + ++ + + +++ G+IR  ++  D+  K   G+ FV     + AE
Sbjct: 12  LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAE 65


>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 630 PCKIYNPY*LQHIINVLGYL-GLFSVLLFFHNRHAHRHSQFDI 505
           PC +  PY + H+  ++GY+  + + LLF +  H  R + + I
Sbjct: 640 PCAMAVPYHVHHVFLLMGYINSMVNPLLFSYQNHQFRKAYWKI 682


>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/66 (21%), Positives = 31/66 (46%)
 Frame = +3

Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
           ++ + ++IG +     E+++  L  +CG+IR   + +D       GF F  +  +  A  
Sbjct: 150 ESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQ 209

Query: 384 CMRYIN 401
            +  +N
Sbjct: 210 AITTLN 215


>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
          Length = 248

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 207 ASSTLYIGNLSFYTTEEQIYELYSRCGDIR-RVIMGLDKYKKTPCGFCFVEYYARE 371
           A    YIGNLS+   E+ + E +  C  +  RVI   D+    P GF FV   A++
Sbjct: 80  AEHRCYIGNLSYSVDEQALEEKFHDCNVVDVRVI--TDRETGRPRGFGFVTLEAKK 133


>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 267 ELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLD 416
           EL+S  G ++R  +  D   ++  G   V +  REDA+  ++  NG  LD
Sbjct: 1   ELFSEFGQVKRSCVHYDASGRSH-GTAEVVFVRREDAQQALKQYNGVPLD 49


>SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
 Frame = -2

Query: 563 FLCYYFSITATPTVIVSSIFISNLASCFATTVLSTFNESSIPVTANYSVIQPRAIYIPHT 384
           F C    +      + SS+  S ++    TT++    + SI  T N++ I    +++   
Sbjct: 44  FACKLHGVLVMAFSVASSLSASAMSINRYTTIIYASKQKSITFTRNWTKIMLAFLWLFSA 103

Query: 383 IFGIFP-----RIVFYKTKSTRCFLVF 318
           IF I P     R  ++  K+  CF+ +
Sbjct: 104 IFAILPLVGWSRYTYFPAKAI-CFISY 129


>SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 464 STFNESSIPVTANYSVIQPR 405
           ST+N+ + P++A Y VI+PR
Sbjct: 465 STYNDDTSPISATYKVIEPR 484


>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
          Length = 343

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 198 LLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA 377
           L ++  T+++G+L   T E  I+E +S  G+    +  +        GF FV    +E  
Sbjct: 37  LEQSRRTIFVGSLHPSTVESTIFEYFSTLGEQVEHVKCIRTLSGKSKGFAFVRLRKKEAV 96

Query: 378 ENCM 389
           E+ +
Sbjct: 97  ESVL 100


>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
          Length = 67

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCG--DIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
           S+ +Y+G L + T E+ + + +   G   IR +I+          G+ FVE+   +DAE+
Sbjct: 2   SNRVYLGRLPYGTREDDVKKFFYTYGRFKIREIIL--------KDGYGFVEFDYSDDAED 53

Query: 384 CMRYINGTRL 413
            +   NG ++
Sbjct: 54  AVYECNGKKM 63


>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1208

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 285 GDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 437
           G+I  V +  DK      GFCF+ Y  +      +   NG +L  R IR D
Sbjct: 3   GEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVD 53


>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 578 GIWVYFLCYYFSITATPTVIVSSIFISNLASCFATTVLSTFNE 450
           GIW YF+  Y  +   P+V +S++ ++  AS F      + NE
Sbjct: 719 GIWDYFIKSYHELLEKPSVSISTVALT-AASSFVYFAKLSMNE 760


>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
          Length = 868

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -1

Query: 417 HPASCHLYT--SYNFRHLPAHSILQ-NKIHKVFSC-ICLVPLLLFLYRRIVNTVH 265
           HP   H Y   S   RHLP+H ILQ + I++  S  I  +P  +  Y  +  T H
Sbjct: 704 HPPVSHTYRHKSAGIRHLPSHIILQVSHIYRHTSAGISHLPSQIRRYPTLTTTHH 758


>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
          Length = 419

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +3

Query: 189 QEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 368
           +EKL K +  LYI  L   TT++ +  L  + G I      LDK      G+ FV++ + 
Sbjct: 94  EEKLSKTN--LYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESP 151

Query: 369 EDAENCM 389
             A+  +
Sbjct: 152 ISAQKAV 158


>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
 Frame = +3

Query: 186 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSR----CGDIRRVIMGLDKY--KKTPC--G 341
           +Q+ +    + +Y GNL F  T++++  ++        D+  V    +++  ++ P   G
Sbjct: 41  DQKMVFADPNKVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRG 100

Query: 342 FCFVEYYAREDAENCMRYINGTRLDDRIIR 431
           F FV +   EDA+  ++ +NG  +  R ++
Sbjct: 101 FGFVTFANPEDAQTAVKSLNGKEVQGRTLK 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,896,313
Number of Sequences: 59808
Number of extensions: 388575
Number of successful extensions: 990
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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