Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A11
         (366 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51477| Best HMM Match : Coat_X (HMM E-Value=2.7)                    29   1.5  
SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)                29   1.5  
SB_23584| Best HMM Match : RVT_1 (HMM E-Value=0.0029)                  28   2.7  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_23359| Best HMM Match : I-set (HMM E-Value=0)                       27   6.2  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_40035| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)                 26   8.1  
SB_15051| Best HMM Match : 7tm_1 (HMM E-Value=4e-06)                   26   8.1  
SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)                  26   8.1  

>SB_51477| Best HMM Match : Coat_X (HMM E-Value=2.7)
          Length = 320

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 67  SFRKFIDISTHINGTKVKNN-LPYVSSGIPSL 159
           +F+KF    THI G ++K+N    +SSG+P +
Sbjct: 12  NFKKFAIFITHIFGKQIKDNRYTNISSGLPEV 43


>SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)
          Length = 348

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -2

Query: 227 LKEIHEPTTKMLPAGIPPPTIWSKDGIPEDTYGRLFFTFVPFICVLISINFRKLRI 60
           LK++ E   + L  G   P     DG+PE+T  +LF  F    C  I I  +++ I
Sbjct: 47  LKKVKEKVDQKLTKGKDIP-----DGLPEETSKKLFSAFADKFCTRIRIENKEVII 97


>SB_23584| Best HMM Match : RVT_1 (HMM E-Value=0.0029)
          Length = 511

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 155 DGIPEDTYGRLFFTFVPFICVLISINFRKLRI 60
           DGIP   +    F F PF+  L + + R+ RI
Sbjct: 170 DGIPNKVWSLFAFEFAPFVAELYNSSLRQGRI 201


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 101 ICVLISINFRKLRIFY*YIKPISVKYCLSIKIH 3
           +C L+SI    L +   Y   +SV+YCLS+ +H
Sbjct: 162 VCPLLSITVCPL-LSVCYCPLLSVRYCLSVTVH 193


>SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 718

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 126 VIFHFCAIYMRTYIYKFSKTTHFLLIYQADFCKIL 22
           + F+ C I++  Y Y   K    LLI     C IL
Sbjct: 393 IAFNACIIFIYVYSYNMRKVNSMLLISNMAVCDIL 427


>SB_23359| Best HMM Match : I-set (HMM E-Value=0)
          Length = 367

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/16 (68%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = -2

Query: 188 AGIPPPTI-WSKDGIP 144
           AG+PPP I WS+DG P
Sbjct: 31  AGMPPPFITWSRDGQP 46


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 185 GIPPPTIWSKDGIPEDTYGRLFFTFVPFICVLISINFRKLRIF 57
           G PPP      G+P    G   + F  F   L+  N  KL++F
Sbjct: 599 GPPPPGAGQGWGLPPPGSGLHLYCFTSFNLSLVMANGTKLQVF 641


>SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -2

Query: 266 FIKFVLALRYYAILKEIHEPTTKMLPAGIPPPTIWSKDGIPEDTYGRLFFTFVP 105
           F+ FV A+  + +LK I+ P +   P   P   +     IP      L+F   P
Sbjct: 321 FLSFVFAILPFTVLKGIYVPDSHCTPVSEPTSEVIEYMMIPGGLAFILYFLTFP 374


>SB_40035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 258 ICFGSKILCNFKRNSRTYNKNAACRY 181
           +C+GSK L    R  RT+ K+A  +Y
Sbjct: 145 VCYGSKFLTAAVRWGRTHEKDALDKY 170


>SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -2

Query: 266 FIKFVLALRYYAILKEIHEPTTKMLPAGIPPPTIWSKDGIPEDTYGRLFFTFVP 105
           F+ FV A+  + +LK I+ P +   P   P   +     IP      L+F   P
Sbjct: 438 FLSFVFAILPFTVLKGIYVPDSHCTPVSEPTSEVIEYMMIPGGLAFILYFLTFP 491


>SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)
          Length = 646

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -2

Query: 266 FIKFVLALRYYAILKEIHEPTTKMLPAGIPPPTIWSKDGIPEDTYGRLFFTFVP 105
           F+ FV A+  + +LK I+ P +   P   P   +     IP      L+F   P
Sbjct: 481 FLSFVFAILPFTVLKGIYVPDSHCTPVSEPTSEVIEYMMIPGGLAFILYFLTFP 534


>SB_15051| Best HMM Match : 7tm_1 (HMM E-Value=4e-06)
          Length = 403

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -2

Query: 266 FIKFVLALRYYAILKEIHEPTTKMLPAGIPPPTIWSKDGIPEDTYGRLFFTFVP 105
           F+ FV A+  + +LK I+ P +   P   P   +     IP      L+F   P
Sbjct: 223 FLSFVFAILPFTVLKGIYVPDSHCTPVSEPTSEVIEYMMIPGGLAFILYFLTFP 276


>SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)
          Length = 419

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -2

Query: 266 FIKFVLALRYYAILKEIHEPTTKMLPAGIPPPTIWSKDGIPEDTYGRLFFTFVP 105
           F+ FV A+  + +LK I+ P +   P   P   +     IP      L+F   P
Sbjct: 239 FLSFVFAILPFTVLKGIYVPDSHCTPVSEPTSEVIEYMMIPGGLAFILYFLTFP 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,417,401
Number of Sequences: 59808
Number of extensions: 162181
Number of successful extensions: 406
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)