Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A04
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58955| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_4139| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_56494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_4024| Best HMM Match : TatD_DNase (HMM E-Value=0)                   29   3.3  
SB_36237| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)               29   4.3  
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)                   28   7.6  
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_20771| Best HMM Match : Popeye (HMM E-Value=6.4)                    28   7.6  
SB_21574| Best HMM Match : T-box (HMM E-Value=0)                       28   7.6  

>SB_58955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
 Frame = +2

Query: 407 IIVTGGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLS---NPDDYLQGLRDLISGNK 577
           +I+T G+  +S+KA++L++        VGCHPTRC+EF S   NPD+YL  L  L   NK
Sbjct: 1   MIITSGNYSESEKALKLAKEQ------VGCHPTRCTEFESKGSNPDEYLNKLLSLAQDNK 54

Query: 578 DKVVAIGECGL 610
           +KVVA+GECGL
Sbjct: 55  EKVVAVGECGL 65


>SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
 Frame = +2

Query: 359 DLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRT-DSKLFTTVGCHPTRCSEFLSNPD 535
           DLD V++RA  +GI K+I+TG ++     A+ L+R     +F  VG HP    +  +  D
Sbjct: 162 DLDFVVDRATNAGIKKMILTGNTIRMCHNAVTLARDHPGVIFGGVGIHPHFVEKEWN--D 219

Query: 536 DYLQGLRDLISGNKDKVVAIGECGLXYERFHFCEKEVQL 652
           D  + +R +IS    +V+A+GE GL + R ++ +KEVQ+
Sbjct: 220 DTYEVMRGMIS--LPEVIAVGEVGLDFYR-NYSKKEVQI 255


>SB_4139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +2

Query: 422 GSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKDKVVAIGE 601
           GS ED+K  +++   + K+  T G H  R  E +     Y       +   K K + + +
Sbjct: 25  GSEEDNKNLVDILNAEGKILVTPGIHKGRRGETIIRRAYYPMTRYGALHLAKQKSIGLND 84

Query: 602 C 604
           C
Sbjct: 85  C 85


>SB_56494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 488 VGCHPTRC-SEFLSNPDDYLQGLRDLISGNKDKVVAIGECGLXY-ERFHFCEKE 643
           +G HP +  +   S     L+G+ D+I  N  K+ A+GE GL +  RF   +K+
Sbjct: 31  LGIHPVQSLNPERSVTHSDLEGVEDIIRQNHHKLFAVGEIGLDFTPRFIKSDKD 84


>SB_4024| Best HMM Match : TatD_DNase (HMM E-Value=0)
          Length = 236

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 464 TDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISG--NKDKVVAIGECGLXYER 622
           T+  ++   GCHP        N D Y + +   I       K VA+GECGL Y +
Sbjct: 41  TEDGVWGAFGCHP-------HNSDYYTETMESKIIECLKHPKAVALGECGLDYSK 88


>SB_36237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 527

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +2

Query: 419 GGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLSNPD 535
           G S  D+KK  E   T  KL T V CHP      L + D
Sbjct: 323 GSSRRDNKKLSEELSTGRKLKTRVPCHPDELKPQLPDND 361


>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
          Length = 317

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 452 ELSRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKDKVVAIGECGLXYER 622
           E SR+    +   GCHP  C+E  +   D+   L+  I+      +  G+CG   +R
Sbjct: 236 EFSRSKDLKYHEKGCHPCVCNE-CNETFDHENKLKRHINKKHAASLKCGDCGKTLQR 291


>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
          Length = 1188

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -2

Query: 492 PTVVNNLESVLESSIAFLLSSRLPPVTMILLMPLV 388
           P + +N+E VL S++  +LSS + PV +  + P++
Sbjct: 553 PVLASNVEPVLSSNVEPVLSSNVEPVLVSSVEPVL 587


>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 344 RKHEPDL--DVVLERAWTSGINKIIVTGGS 427
           +KH+PD     + +R WT G   + VTGG+
Sbjct: 110 KKHDPDFASTSIEDRKWTFGRCNVFVTGGN 139


>SB_20771| Best HMM Match : Popeye (HMM E-Value=6.4)
          Length = 353

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 386 WTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSE 517
           W S  ++  + G   +D++  +     +S  F + GC+PT C E
Sbjct: 54  WMSPTDRPDLGGKEDDDNRLGLMTDEVESVEFNSSGCYPTVCVE 97


>SB_21574| Best HMM Match : T-box (HMM E-Value=0)
          Length = 473

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 429 LKTVKKRSSFLGQTLSYSQPWDVIQPGAVSFYPILMTTYKDCEI 560
           L  V +RSS LG+ LSY  P  V   G V  YP L+    + E+
Sbjct: 258 LDPVFQRSSLLGEYLSYQNP--VGDQGVVHRYPPLVQRMVNSEL 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,594,858
Number of Sequences: 59808
Number of extensions: 328508
Number of successful extensions: 745
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)