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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0029
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_52422| Best HMM Match : Nop17p (HMM E-Value=6.5e-13)                31   0.71 
SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)         28   6.6  
SB_433| Best HMM Match : DUF883 (HMM E-Value=0.75)                     28   6.6  
SB_46248| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)                  28   6.6  
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)                        28   6.6  
SB_36623| Best HMM Match : NACHT (HMM E-Value=0.26)                    27   8.8  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               27   8.8  
SB_11352| Best HMM Match : LRR_1 (HMM E-Value=0.0019)                  27   8.8  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 8/157 (5%)
 Frame = +3

Query: 153 ISIRLKSVKNIQKIXQSMKMVSAAKYTRAERDLK--------LLVPMVKVQYSSMKGLRL 308
           +S+RL+SVKNIQKI +SMKMVSAAK+ RAE++LK              KV+         
Sbjct: 62  VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121

Query: 309 HLLKMTPSNCLLL*PLTXXCAECTHWCIQSDPQPSRRTWC*EHQGDLCGR*ISRYPAKIV 488
           HL+ +  S+  L   +    A+     I  +  PSR        GD   + +SR   K +
Sbjct: 122 HLIVVLSSDRGLCGGIHSGLAKAVKASIAGN--PSRNVGIVSF-GDKTKQILSRTLGKNM 178

Query: 489 RKAHH*CANEIGRLPPTFLDASQLATAILTSGYEFGS 599
             +      ++G+ PP F +A+ LA  IL +G++F +
Sbjct: 179 LMSF----MDVGKKPPLFCEATFLAQEILDAGFDFNT 211



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +2

Query: 251 ETARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRXLCG 373
           ++AR YG+GA   Y++ E+    +DPK L V ++SDR LCG
Sbjct: 95  KSARAYGDGATALYDKVEIKQESEDPKHLIVVLSSDRGLCG 135



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +1

Query: 376 VHTGVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHIISVLM 516
           +H+G++K ++  +    + N+ ++  GDK++ IL R  GK+++   M
Sbjct: 137 IHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQILSRTLGKNMLMSFM 183


>SB_52422| Best HMM Match : Nop17p (HMM E-Value=6.5e-13)
          Length = 175

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 545 QESRWETSDLISTLMMCFP---YNLCRIPRDLSPTQITLMFSAPG 420
           +ES   TS LISTL    P   YN+   P D  P  I L  S PG
Sbjct: 82  EESSKSTSQLISTLEPSIPQPMYNILTEPSDDKPEFIVLEISLPG 126


>SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 545 QESRWETSDLISTLMMCFP---YNLCRIPRDLSPTQITLMFSAPG 420
           +ES   TS LISTL    P   YN+   P D  P  I L  S PG
Sbjct: 191 EESSKSTSQLISTLEPSIPQPMYNILTEPSDDKPEFIVLEISLPG 235


>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1203

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 207 KMVSAAKYTRAERDLKLLVPMVKVQYSSMKGLRLHLLKMTPSNCLL 344
           K+VS    T   + +KL + + K Q ++M+G +  L   T SNC L
Sbjct: 214 KLVSDDDGTPYRKKMKLSLKVNKEQQNTMEGQKAGLNTQTESNCYL 259


>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
          Length = 490

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 375 CTHWCIQSDPQPSR 416
           C+ WCIQ  PQP R
Sbjct: 324 CSKWCIQGIPQPER 337


>SB_433| Best HMM Match : DUF883 (HMM E-Value=0.75)
          Length = 386

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -1

Query: 433 SQHQVRRDGCGSLWIHQCVHSAQXSVRGHSNKQLLGVI---FRRCNLSPF--IELYCTFT 269
           +QH++R  G  +++IH  + +A  S++  +  Q+L  I     + N SP   I+L  T T
Sbjct: 295 TQHEIRMKGLEAIFIHCDLLNASSSLKQGAPSQILACIELDKGKINFSPHSPIQLSTTST 354

Query: 268 IGTSSFR 248
              SS R
Sbjct: 355 DYVSSLR 361


>SB_46248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
 Frame = +3

Query: 132 NMATXKAISIRLKSVKNIQKIXQSMKMVSAAKYTRAERDLKLLVPMVK---VQYSSMKGL 302
           N+AT +++S  ++S  +     ++  +    K   AERD+KLL   VK   V++S+   +
Sbjct: 3   NIAT-RSVSSSMRSAISANNY-KNHALGKQLKTLEAERDMKLLSIQVKKDDVKFSTSPKM 60

Query: 303 RLHLLKMTPSN 335
           ++  LK  P+N
Sbjct: 61  KVKKLKSLPAN 71


>SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)
          Length = 662

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 9   YFFVDW*ILPINTHKICKMLGRFGPGVGTQVVAVVYHQPNRNMA 140
           YFFV+  +LP+      K +  F  G G  +V  VY+    ++A
Sbjct: 113 YFFVEAGLLPLTAFYSEKTVFAFSGGTGFGLVGTVYYTGKHSLA 156


>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
          Length = 215

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 62  NVGTLRTGCRHPSRGGGLP 118
           N+ TL TG R P  GGG+P
Sbjct: 26  NLNTLPTGARQPVPGGGVP 44


>SB_36623| Best HMM Match : NACHT (HMM E-Value=0.26)
          Length = 420

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
 Frame = +3

Query: 102 VAVVYHQPNRNMATXKAISIRLKSV-----KNIQKIXQSMKMVSAAKYTRAERDLKLLVP 266
           V + +H+  RN        I LK+      ++++   +++  +   +  +  RD KL+  
Sbjct: 178 VKIFFHKRTRNREAYGCSKIDLKTYMYKPFEDLKPENENVFKLLGEQAFKGIRDGKLIFE 237

Query: 267 MVKVQYSSMKGLRLHLLKMTPSNCLLL*PLTXXC 368
            VK+  + +    LH L   PSN L+  P    C
Sbjct: 238 SVKIDAALLNRGLLHSLPEIPSNSLVEPPKQHFC 271


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 370 AQXSVRGHSNKQLLGV-IFRRCNLSPFIELYCTFTIGTSSFRS 245
           A  SV  H +K+L  V +    N   F  L C+ T+GT  FRS
Sbjct: 472 ASYSVLKHVDKKLFDVFVISPRNHFLFTPLLCSTTVGTLEFRS 514


>SB_11352| Best HMM Match : LRR_1 (HMM E-Value=0.0019)
          Length = 507

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
 Frame = +3

Query: 102 VAVVYHQPNRNMATXKAISIRLKSV-----KNIQKIXQSMKMVSAAKYTRAERDLKLLVP 266
           V + +H+  RN        I LK+      ++++   +++  +   +  +  RD KL+  
Sbjct: 116 VKIFFHKRTRNREAYGCSKIDLKTYMYKPFEDLKPENENVFKLLGEQAFKGIRDGKLIFE 175

Query: 267 MVKVQYSSMKGLRLHLLKMTPSNCLLL*PLTXXC 368
            VK+  + +    LH L   PSN L+  P    C
Sbjct: 176 SVKIDAALLNRGLLHSLPEIPSNSLVEPPKQYFC 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,899,069
Number of Sequences: 59808
Number of extensions: 448979
Number of successful extensions: 1044
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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