Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0026
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0) 54 9e-08
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51) 29 2.9
SB_27215| Best HMM Match : PPR (HMM E-Value=3.2) 29 3.8
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_51443| Best HMM Match : DRAT (HMM E-Value=2.3) 29 5.0
SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25) 28 6.6
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) 28 6.6
SB_25670| Best HMM Match : Sarcoglycan_1 (HMM E-Value=6.2e-06) 28 8.8
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0) 28 8.8
>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
Length = 446
Score = 54.4 bits (125), Expect = 9e-08
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Frame = +3
Query: 420 NSNMYFWYFPPL---SKNEAAPVLLWLQGGPGAAPYS-GSLRKSGR*SQARTVLPKESII 587
+++M++W + S+ E P++LWLQGGPG + G+ + G L S +
Sbjct: 43 SAHMFWWLYGARGEPSERENKPLILWLQGGPGGSSTGYGNFMELGP-LDVNLKLRNTSWV 101
Query: 588 GAKNYHLIFIDNPVGTGFSFTDKDEGYCTDETCIAKGL 701
N ++F+DNPVG GFS+ Y T+ T IA+ L
Sbjct: 102 EVAN--VLFVDNPVGAGFSYVTDKGAYTTNVTGIAQDL 137
>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 335 RPGTIKSVIDGNTWDRESRGILYS*REVQFKYVLLVFPAFIEERSCTGFAVAARR 499
R TI S G W R++ + S F Y++LV P F+ ++ GF R
Sbjct: 372 RVHTILSTYAGAVWTRKTSHLTLSSWAFLFDYIVLVCPTFVYNKTYDGFGEGDNR 426
>SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51)
Length = 1275
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 410 REVQFKYVLLVFPAFIEERSCTGFAVAARRSRGSSLFGLFTEVGPL 547
R+ QF Y++L+ P F+ ++ GF R LFG+ E G +
Sbjct: 711 RDGQFDYIVLMCPTFVYNKTYDGFGEGDNR-----LFGIAPEAGQI 751
>SB_27215| Best HMM Match : PPR (HMM E-Value=3.2)
Length = 603
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 498 GPGAAPYSGSLRKSGR*SQARTVLPKESIIGAKNYHLIFIDNPVGTGFSFTDKDE 662
GPG AP +L +S R + K + KN ++ NP T +SFT +E
Sbjct: 212 GPGGAPPGSTLDQS-----TRVIEFKSCGVKVKNIKRFYVLNPTSTTYSFTWTNE 261
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -3
Query: 540 PTSVKSPNKELPRDLLAATAKPV---QLR--SSIKAGNTKSTYLN*TS 412
PT++ S N LPR+ + TA PV Q R + G T S Y N T+
Sbjct: 2482 PTNITSINASLPREYVDTTASPVTTYQYRVVAFTTGGGTPSPYSNITT 2529
>SB_51443| Best HMM Match : DRAT (HMM E-Value=2.3)
Length = 259
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 419 QFKYVLLVFPAFIEERSCTGFAVAARR 499
+F Y++L+FP F+ ++ GFA R
Sbjct: 226 KFDYIVLIFPTFVYNKTYDGFAEGDNR 252
>SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)
Length = 1486
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 78 NNYSIRNIILIIRTNCFKLLTRHDGCEMEASAERSAVC 191
N+ ++ + L+ R FKLLT D C + +++ ++ C
Sbjct: 464 NHCTVETVSLVPRMEAFKLLTEEDVCMLIKNSKCTSCC 501
>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
Length = 2822
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 570 AKPSLL-AISGPTSVKSPNKELPRDLLAATAKPVQLRSSIKAGNTKS 433
A+PSLL +I GP + P E+P D +T R ++ AG TK+
Sbjct: 1675 AQPSLLLSIRGPATHGLPEIEIPLDNPDSTIFSYVQRVTLAAGGTKT 1721
>SB_25670| Best HMM Match : Sarcoglycan_1 (HMM E-Value=6.2e-06)
Length = 436
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 567 KPSLLAISGPTSVKSPNKELPRDLLAATAKPVQ 469
KP + +SGPTSV +P P D + T +Q
Sbjct: 281 KPLIAGLSGPTSVYTPLDPPPTDRIFQTNHEIQ 313
>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
Length = 2376
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 411 EKFNSNMYFWYFPPLSKNEAAPVLLWLQGGP 503
E+FN + PPL+ N P W +G P
Sbjct: 1684 ERFNRTLLAMLSPPLTDNSLPPSREWTKGAP 1714
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,256,754
Number of Sequences: 59808
Number of extensions: 425703
Number of successful extensions: 1633
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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