Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0020
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8)                      30   2.1  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)                   28   6.4  
SB_6185| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  
SB_30224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8)
          Length = 335

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 178 HVVYYFVTYYIKMFYRIYFPEYNIHFSIYFDN 83
           H  YY+  YY   +Y  Y+  Y  ++  Y+D+
Sbjct: 264 HSYYYYYYYYYYYYYYYYYYYYYYYYYYYYDD 295


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 178 HVVYYFVTYYIKMFYRIYFPEYNIHFSIYFDNTQLVRFY 62
           H  YY+  YY   +Y  Y+  Y  ++  Y+ +     +Y
Sbjct: 101 HAYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYY 139


>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
          Length = 1195

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 246 SCFAV*ITLFSTISEIFSSLRVYMLFIISLHIISKCSIEFIF 121
           S   V  +L ST++ +  SL     F+ +L     CSIEF F
Sbjct: 633 SVLRVVYSLLSTLAHLALSLSFLSFFLSALSFCINCSIEFTF 674


>SB_6185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = +1

Query: 226 DSNCKTG----TPDIISTNKYDINMIIEHLNTKDWNQEK 330
           +SNCK+G    T D    +K ++  +++ L+ KD N+EK
Sbjct: 39  NSNCKSGQAEKTKDGRLRSKEEVEQLLDRLSDKDKNKEK 77


>SB_30224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = +1

Query: 226 DSNCKTG----TPDIISTNKYDINMIIEHLNTKDWNQEK 330
           +SNCK+G    T D    +K ++  +++ L+ KD N+EK
Sbjct: 39  NSNCKSGQAEKTKDGRLRSKEEVEQLLDRLSDKDKNKEK 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,232,676
Number of Sequences: 59808
Number of extensions: 314591
Number of successful extensions: 705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)