Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0013
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42245| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   3e-10
SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_53421| Best HMM Match : Arf (HMM E-Value=0)                         29   3.6  

>SB_42245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 28/61 (45%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
 Frame = +3

Query: 525 LGKMLVIMCILSG--VNIFAWLNKPQPAWWSWCLENKLYACMMMFFLANMIEGQLISSGS 698
           + K++ I  I+ G  V +F  LN   P  ++W + NK+Y+C+++FFL+NMIEGQLIS+G+
Sbjct: 1   MAKLIAIGIIMLGEQVRLFENLNITPPEIYTWAVNNKMYSCILIFFLSNMIEGQLISTGA 60

Query: 699 F 701
           F
Sbjct: 61  F 61



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 716 NNIPLWSKIXTGRIPXPS 769
           N++P+WSK+  GR+P P+
Sbjct: 66  NDMPVWSKLQAGRLPSPN 83


>SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = -2

Query: 726 GML-FKRYLKSSQRILAVL-----QSYLLKRTSSCMHTACFQGTNSTKQVVVCSTKQKYS 565
           GML FK Y+K+  R+L+       QS+++  TSS M T CF   +     + C     +S
Sbjct: 483 GMLGFKDYIKTPMRVLSASHYHHRQSFIIMITSSVMTTRCFYYCHRHHNPLACHF-DHFS 541

Query: 564 HR 559
           H+
Sbjct: 542 HK 543


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 620  KAPTPPSRLWFVQPSKNIHTAEYTHDDQHFAQNQ*FVKIHVKTR 489
            + P+P +   F  P  NI  A+ TH+ QH       V++HV+TR
Sbjct: 2550 EGPSPVNTCGFRVPKMNIQGAKATHEVQHLTLLS--VELHVRTR 2591


>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
          Length = 625

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 488 WVIVSSNDRNLWVFLLYNSCIVFKYLFVATRITVID 381
           W+     +   WVFL++N+C VF +    T +T I+
Sbjct: 151 WMATQIRNNKYWVFLVFNTC-VFAHFDRVTSLTFIN 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,940,545
Number of Sequences: 59808
Number of extensions: 550508
Number of successful extensions: 1370
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)