Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0001
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   9e-11
SB_54432| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42)             29   2.5  
SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)                 28   4.3  
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)                   27   7.6  

>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 28/62 (45%), Positives = 43/62 (69%)
 Frame = +3

Query: 261 VRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKV 440
           V+KA+  A++ +KW ++ WA+KLA ++KRA + D+DRFKL  A+ K+NR      K LK 
Sbjct: 281 VKKAFEAAQVQDKWEQTAWARKLAMRKKRATLNDFDRFKLKLAKQKKNRLLRTEVKKLKK 340

Query: 441 KA 446
           +A
Sbjct: 341 EA 342


>SB_54432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 234 IRVHSPYRLVRKAWTDAKLNEKWTESQ--WAQKLANKEKRAQMTDYD 368
           + +H+ YR +  +    KLN++ ++S   WA KLA+ EK+    + D
Sbjct: 34  LELHNKYRKIHDS-PPMKLNDEMSKSAQAWADKLASMEKQQHSNEKD 79


>SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42)
          Length = 347

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 239 AYLRRNFVRWSWFKRICCLGTPLPGPSTSARVWSITSTTLTNF 111
           AY+ R++  WS+ K  C +  P+   S S  + +IT  TL  +
Sbjct: 87  AYIIRDYFSWSFGKIACQIIIPMNDVSFSVSICTITVITLERY 129


>SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 305 CPFFIEFSICPRFPHKTVGAVNAYLRRNFVRWSWFKRI 192
           C FF+   +CPR P +  G ++    R+F    ++K I
Sbjct: 507 CSFFLARYLCPRSPRRGWGELSLTTMRHFRCQRYYKNI 544


>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
          Length = 337

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 82  ALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIR-LNQLHLTKF 225
           +L+ D  L  + VS VDV   + A+VD P +   RQ ++ ++  H   F
Sbjct: 70  SLIGDYDLFAREVSTVDVRIASHAIVDRPRASWKRQSLKGISNFHFLAF 118


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 192 DPLKPTPSHKIPPQIRVHSPYRLVRKAWTDA 284
           D L   P+H++PP   + +PYRL      DA
Sbjct: 568 DALSGMPTHRVPPPHPLSAPYRLHHGTSCDA 598


>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
          Length = 968

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 186 ATDPLKPTPSHKIPPQIRVHSPYRLVRKAWTDAKLNEKWTES 311
           A  P  PTP+H++ P  R+H+ Y L     T    + ++T +
Sbjct: 445 AYTPSTPTPTHRVHP--RLHAQYTLAYTPSTPTPTHAEYTHA 484



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 186 ATDPLKPTPSHKIPPQIRVHSPYRLVRKAWTDAKLNEKWTES 311
           A  P  PTP+H++ P  R+H+ Y L     T    + ++T +
Sbjct: 628 AYTPSTPTPTHRVHP--RLHAQYTLAYTPSTPTPTHAEYTHA 667


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,775,613
Number of Sequences: 59808
Number of extensions: 358864
Number of successful extensions: 970
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)