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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0067
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   7e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.044
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)                 31   0.55 
SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046)                   31   0.96 
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26)                     29   3.9  
SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   6.7  
SB_38663| Best HMM Match : ET (HMM E-Value=0.58)                       27   8.9  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -2

Query: 397 DVVAVSQAPSPESNPDSPLPVTTM 326
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -2

Query: 388 AVSQAPSPESNPDSPLPVTTM 326
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -3

Query: 387 PFLRLPLRNRTLIPRYP 337
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
          Length = 736

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 449 LKLPCREWVICAPAA-FLGCGSRFSGSLSGIEP*FPVTRDNHGSRRNYHRKLIRQTFERC 273
           L+ PCR +  C+PA     C  RF G ++G     P+    +G RR +H  L+   F  C
Sbjct: 127 LEKPCRNFGTCSPAPNDYNCTCRFDGLVTGKNCDVPLIMLYYGQRR-HHGCLV--CFRLC 183

Query: 272 VAGT 261
           V+ +
Sbjct: 184 VSSS 187


>SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046)
          Length = 396

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 512 PPRATLKESACSPWPRGPGNPLKLPCRE 429
           PPR     +   P  RGP NP KL C E
Sbjct: 200 PPRCISSSTPVRPTRRGPRNPAKLTCME 227


>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 512 PPRATLKESACSPWPRGPGNPLKLPCRE 429
           PPR     +   P  RGP NP KL C E
Sbjct: 200 PPRCISSSTPVRPTRRGPRNPAKLTCME 227


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
 Frame = -1

Query: 536  CDALRCPG-PPRATLKESA------CSPWPRGPGNPLKLPCREWVICAPAAFLGCGSRFS 378
            CD L CPG PP +   E +      C  +P+  G   ++PC        A+   C + +S
Sbjct: 1586 CDKLDCPGSPPCSGQGECSNTNPRRCQCFPKWGGEKCEIPCLNGYNYGNASDCVCDACYS 1645

Query: 377  GS 372
            GS
Sbjct: 1646 GS 1647


>SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26)
          Length = 317

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 536 CDALRCPGPPRAT---LKESACSPWPRGPGNPLKLPCRE 429
           C  L CP P   +    +E   S  P GPG P K PC+E
Sbjct: 38  CSGL-CPTPTTVSPTPTEEPPPSTTPPGPGEPDKKPCKE 75


>SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 688

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 403 SLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKDASPVLDQRSAKVIQI 230
           S  VV  + A +    P  P+ VTT V A  T E+     + +A+P+L  + +K + +
Sbjct: 120 SSPVVTTAVASAASLKPSKPIVVTTAVAALPTPETSVAVSIPNAAPLLMPQPSKDVHL 177


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 406 PSLDVVAVSQAPSPESNPDSPLP 338
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_38663| Best HMM Match : ET (HMM E-Value=0.58)
          Length = 168

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 451 GLPGPLGQGEHADSFSVARGGPGHLRASQTCYCSISCG 564
           GLPG +    +     V  G PG +R+++ C C +  G
Sbjct: 78  GLPGIVRSARYCTVCQVLYGLPGIVRSARYCICQVLYG 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,223,568
Number of Sequences: 59808
Number of extensions: 422315
Number of successful extensions: 1302
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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