Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20036
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_51959| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)                   27   8.7  

>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/79 (24%), Positives = 40/79 (50%)
 Frame = +2

Query: 326 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDH 505
           DLH  + Q  +Q G     + +  + QQ  ++  Q+Q QQ+ L     +  ++QS +++ 
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQL----QKKQQKQSSMEEK 613

Query: 506 VTEDKQYLKLDNTKGSSDD 562
           ++ + + + L    GSS +
Sbjct: 614 LSSEIEKMTLATGDGSSKE 632


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 418 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCHRGQTVPEAR 537
           S++P +   R S GSL P  +T+  TSRS  R ++   AR
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRSTPRSRSRSRAR 218


>SB_51959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 248 PWIRLPVMDKGWKGNRQILLPHPV*SDLHRADCQAHKQKGPSR 376
           PW R P     W  + + L+P P  +DL R     HK++  SR
Sbjct: 46  PWTRGPYK-MAWAFSDENLVPEPTQADLERVRRLRHKRRRRSR 87


>SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 175 YLKEKKGEVIKEAVKRLIENGKRNTMDSPTS 267
           ++  KK  +IKEA+KR+++N +R  +   TS
Sbjct: 175 FVDGKKLRMIKEAIKRILKNNRRLKIPKVTS 205


>SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)
          Length = 618

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 472 TGVNFQE--TFLLVLSLESPNAILLWFCWSINLRA*WSLLFMSLTVCSVKITLNWMGK*D 299
           TGV F E   +   L L S +++ +++  ++ LRA ++LLF   T      +L + G  D
Sbjct: 517 TGVQFDEFAVYCKPLELASVDSMYIFYKGALGLRANYTLLFPDKTWSYYWTSLEYSGLLD 576

Query: 298 L 296
           L
Sbjct: 577 L 577


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,170,058
Number of Sequences: 59808
Number of extensions: 410539
Number of successful extensions: 1381
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)