Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20021
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   31   1.2  
SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)                    29   2.8  
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   29   5.0  
SB_50828| Best HMM Match : IspA (HMM E-Value=0.88)                     28   6.6  
SB_16151| Best HMM Match : CLN3 (HMM E-Value=2.5)                      28   6.6  
SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   8.7  

>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
 Frame = +2

Query: 197 NLSTFCSAGLNIFII-NISIQGSFRI------SYIVYNCALCPNCNVT*TFVCTLINVFV 355
           N  T  S G ++    N S Q S+ I      +  VYN     NC+V       +  + +
Sbjct: 327 NTRTNYSLGYDVISTRNFSAQASYEIWAWYTANITVYNNVSVDNCSVPFQVHKPVFPINI 386

Query: 356 TSLSWLHIVFSTISVENLNSEISLCQLYI*NYI*WNDRFVQTGVSKQTFY*SFLGSFKLH 535
           TSL  ++  FST S  N+   IS    Y+  Y  W D  V+   S  TF+   LG +  H
Sbjct: 387 TSLDCINANFSTPS--NVMMNISSGNDYLCEYN-WGDGQVEANAS--TFW--TLGQYVSH 439

Query: 536 HFVN 547
           ++ +
Sbjct: 440 NYTS 443


>SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)
          Length = 1764

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 588  HAILYGRLLKKTHRVDIWNRAISIQR*SYKNTASMYL 698
            H I  GRL    H V +WN A S+      N A+ YL
Sbjct: 1375 HVITVGRLGMDDHVVTVWNLATSLPVRRVTNVAASYL 1411


>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
 Frame = +2

Query: 155 SIYS*AEFVKMCLVNLSTFCSAGLNIFIINISIQGSFRISYIV---YNCALCPNCNV-T* 322
           S++     V  CL  +  +CS  + I I++ S+    R+ + V   YNC+     ++   
Sbjct: 226 SLFVLITIVHACLFMIYAYCSLFVFITIVHASVY-DLRVLFFVCFNYNCSRASVYDLRVL 284

Query: 323 TFVCTLINVFVTSLSWLHIVFSTISVENLNSEISLCQLYI*NYI-*WNDRFVQTGVSKQT 499
            FVC   N    S+  L ++F  + +  L + +  C +Y   Y+   N   V   +   T
Sbjct: 285 FFVCLNYNYSRASIYDLRVLFFVLFLLQLFTRV--CLIYANCYLCCHNSNMVSKEILPST 342

Query: 500 FY 505
           F+
Sbjct: 343 FW 344


>SB_50828| Best HMM Match : IspA (HMM E-Value=0.88)
          Length = 245

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 420 YLYANFIYKIIFNGMTVLFKLECPNRPF 503
           YLY  F +   F+G +VL  L  PN PF
Sbjct: 46  YLYVGF-FAFFFSGFSVLTTLAFPNAPF 72


>SB_16151| Best HMM Match : CLN3 (HMM E-Value=2.5)
          Length = 217

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 420 YLYANFIYKIIFNGMTVLFKLECPNRPF 503
           YLY  F +   F+G +VL  L  PN PF
Sbjct: 29  YLYVGF-FAFFFSGFSVLTTLAFPNAPF 55


>SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 990

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 158 LNLVTDHVWFANYLPRVFYI 99
           ++LV++H+W  +YL R FY+
Sbjct: 472 VHLVSEHIWCDDYLVRSFYL 491


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,006,885
Number of Sequences: 59808
Number of extensions: 514964
Number of successful extensions: 997
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)