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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30020
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)             188   2e-48
SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)             188   3e-48
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   4e-38
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)             145   2e-35
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)             144   4e-35
SB_8314| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)              121   6e-28
SB_26353| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.9e-18)       105   2e-23
SB_8138| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)              103   1e-22
SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   1e-13
SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13)        50   2e-06
SB_54113| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0.11)           44   1e-04
SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)                  31   0.77 
SB_21327| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)         29   4.1  
SB_56605| Best HMM Match : WD40 (HMM E-Value=2.5e-12)                  29   4.1  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_11883| Best HMM Match : I-set (HMM E-Value=0)                       28   7.1  
SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  

>SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
          Length = 969

 Score =  188 bits (459), Expect = 2e-48
 Identities = 85/165 (51%), Positives = 120/165 (72%), Gaps = 3/165 (1%)
 Frame = -1

Query: 628 FLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEI 449
           FL+AA   + WP GRGI+HN +KTFLVW NEED LRIISM+MG D+  V+KRL +AVNEI
Sbjct: 454 FLEAAGVNKLWPEGRGIFHNNDKTFLVWVNEEDQLRIISMEMGSDIGSVFKRLCTAVNEI 513

Query: 448 EKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRG 269
           +K++ F H +  G+L+ CPTNLGT +RASVH+            +++  ++H+Q RG  G
Sbjct: 514 DKQLGFQHTEEHGYLSSCPTNLGTGMRASVHV-KIPHASAHPDFQKICDEFHIQARGIHG 572

Query: 268 EH---TEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 143
           EH   T A+ GV+DISNKRR+GL+E   V++MY+G+ +L++IE++
Sbjct: 573 EHSVSTGADAGVFDISNKRRLGLSEVQCVQDMYNGVKKLLEIERA 617



 Score =  185 bits (451), Expect = 2e-47
 Identities = 84/165 (50%), Positives = 119/165 (72%), Gaps = 3/165 (1%)
 Frame = -1

Query: 628  FLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEI 449
            FL+AA   + WP GRGI+HN +KTFLVW NEED LRIISM+MG D+  V+ RL  AVNEI
Sbjct: 806  FLEAAGVNKMWPEGRGIFHNNDKTFLVWVNEEDQLRIISMEMGSDIGSVFSRLCRAVNEI 865

Query: 448  EKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRG 269
            +K++ F+H +  G+L+ CPTNLGT +RASVH+            +++  ++H+Q RG  G
Sbjct: 866  DKQLGFAHKETHGYLSGCPTNLGTGMRASVHV-KIPKASEHPDFQKICDEFHIQARGIHG 924

Query: 268  EHTEAEG---GVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 143
            EH+ + G   GV+DISNKRR+GL+E   V++MY+G+ +L++IEK+
Sbjct: 925  EHSVSTGEDAGVFDISNKRRLGLSEVQCVQDMYNGVKKLLEIEKA 969



 Score =  182 bits (442), Expect = 3e-46
 Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 3/165 (1%)
 Frame = -1

Query: 628 FLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEI 449
           FL+AA   R WP GRGI+HN +KTFLVW NEED LRIISM+MG D+  V++RL +AVNE+
Sbjct: 22  FLEAAGVNREWPEGRGIFHNNDKTFLVWVNEEDQLRIISMEMGSDIGSVFRRLCTAVNEL 81

Query: 448 EKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRG 269
           + K+ F      G+L+ CPTNLGT +RASVH+            +++  ++H+Q RG  G
Sbjct: 82  DNKLGFQQLPGHGYLSSCPTNLGTGMRASVHV-KIPHASAHPDFQKICDEFHIQARGIHG 140

Query: 268 EH---TEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 143
           EH   T A+ GV+DISNKRR+GL+E   V++MY+G+ +L++IEK+
Sbjct: 141 EHSVSTGADAGVFDISNKRRLGLSEVQCVQDMYNGVKKLLEIEKA 185


>SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
          Length = 725

 Score =  188 bits (458), Expect = 3e-48
 Identities = 87/165 (52%), Positives = 115/165 (69%), Gaps = 3/165 (1%)
 Frame = -1

Query: 628 FLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEI 449
           FL AA   + WP GRGI+HN  KTFLVW NEED LRIISM+MG D+  V+ RL  AVNE+
Sbjct: 182 FLDAAGCNKEWPEGRGIFHNNEKTFLVWVNEEDQLRIISMEMGSDIGSVFSRLCRAVNEL 241

Query: 448 EKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRG 269
           +KK+ F H    G+LT CPTNLGT +RASVH+            +++  K+H+Q RG  G
Sbjct: 242 DKKLGFQHTKSHGYLTSCPTNLGTGMRASVHV-KIPHAKDHPEFDKICEKFHIQARGIHG 300

Query: 268 EHTEAEG---GVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 143
           EH+E+ G   GVYDISNKRR+GL+E   V++MY+G+  L++IE++
Sbjct: 301 EHSESTGEDAGVYDISNKRRLGLSEVQCVQDMYNGVKSLLEIERA 345



 Score =  184 bits (449), Expect = 4e-47
 Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 3/165 (1%)
 Frame = -1

Query: 628  FLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEI 449
            FL+AA   + WP GRGI+HN +KTFLVW NEED LRIISM+ G D+  V+ RL  AVNE+
Sbjct: 561  FLEAAGVNKLWPEGRGIFHNNDKTFLVWINEEDQLRIISMEKGSDIGSVFSRLCRAVNEL 620

Query: 448  EKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRG 269
            +KK+ F H D  G+L+ CPTNLGT +RASVH+            +++  ++H+Q RG  G
Sbjct: 621  DKKLGFQHTDAHGYLSGCPTNLGTGMRASVHV-KIPKASEHPDFQKICDEFHIQARGIHG 679

Query: 268  EHTEAEG---GVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 143
            EH+ + G   GV+DISNKRR+GL+E   V++MY+G+ +L++IEK+
Sbjct: 680  EHSVSTGEDAGVFDISNKRRLGLSEVQCVQDMYNGVKKLLEIEKA 724


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score =  155 bits (375), Expect = 4e-38
 Identities = 76/167 (45%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
 Frame = -1

Query: 625  LQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIE 446
            L  A   R WP  RGI+HNENK FLVW NEEDH R+ISM+ GGD++ V+ R  + +N++E
Sbjct: 2494 LTCAGMARDWPDARGIWHNENKNFLVWVNEEDHTRVISMEKGGDMRAVFTRFCNGLNKVE 2553

Query: 445  KKIP-----FSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVR 281
              I      F  ++ LG++  CP+NLGT +RA VH+           L+ + +K  LQ R
Sbjct: 2554 SLIKEAGYEFMWNEHLGYVLTCPSNLGTGLRAGVHLKIPLLSQDEKRLDAILAKLKLQKR 2613

Query: 280  GTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
            GT G  T + GGVYDISN  R+G +E + V+ M DG+  LI++EK L
Sbjct: 2614 GTGGVDTASVGGVYDISNADRIGFSEVELVQGMVDGVGLLIEMEKRL 2660


>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1115

 Score =  145 bits (352), Expect = 2e-35
 Identities = 71/167 (42%), Positives = 103/167 (61%), Gaps = 5/167 (2%)
 Frame = -1

Query: 625 LQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIE 446
           L A+   R WP  RGI+HN+NKTFLVW NEEDH R+ISMQ GG++++V+ R  + +N++E
Sbjct: 173 LLASRMARDWPDARGIWHNDNKTFLVWVNEEDHTRVISMQKGGNMKEVFTRFCNGLNKVE 232

Query: 445 KKI-----PFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVR 281
           K I      F  +  LG++  CP+NLGT +R  VH+            + +     LQ R
Sbjct: 233 KAIKSKGREFMWNKHLGYVLTCPSNLGTGLRGGVHV-KLPLLSKEPRFDSILRTLRLQKR 291

Query: 280 GTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
           GT G  T +  G +DISN  R+G +E + V+++ DG+  LI+IEK+L
Sbjct: 292 GTGGVDTASTDGTFDISNLDRLGTSEVEQVQKVIDGVKALIEIEKAL 338



 Score =  140 bits (340), Expect = 6e-34
 Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 5/167 (2%)
 Frame = -1

Query: 625  LQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIE 446
            L A+   R WP  RGI+HN+NKTFLVW NEEDH R+ISMQ GG++++V+ R  + +N++E
Sbjct: 542  LLASRMARDWPDARGIWHNDNKTFLVWVNEEDHTRVISMQKGGNMKEVFARFCNGLNKVE 601

Query: 445  -----KKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVR 281
                 K   F  ++ LG++  CP+NLGT +R  VH+            + +     LQ R
Sbjct: 602  SLIKSKGYEFMWNEHLGYVLTCPSNLGTGLRGGVHV-KLPLLSARDDFDSLLKALRLQKR 660

Query: 280  GTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
            GT G  T +  G +DISN  R+G +E + V+ + DG+  ++++EK+L
Sbjct: 661  GTGGVDTASTDGTFDISNADRLGTSEVEQVQTVVDGVKLMVELEKAL 707



 Score =  134 bits (324), Expect = 6e-32
 Identities = 67/167 (40%), Positives = 98/167 (58%), Gaps = 5/167 (2%)
 Frame = -1

Query: 625  LQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIE 446
            L +A   R WP  RGI+HN+ K FLVW NEEDH R+ISMQ GG++++V+ R  + + +IE
Sbjct: 939  LLSARMARDWPDARGIWHNDAKNFLVWVNEEDHTRVISMQQGGNMREVFHRFCNGLKKIE 998

Query: 445  -----KKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVR 281
                 K   F   + LG++  CP+NLGT +R  VH+            + +  K  LQ R
Sbjct: 999  DAMKAKGKEFMWDEHLGYVLTCPSNLGTGLRGGVHV-KLPMVSKDARFDGILEKLRLQKR 1057

Query: 280  GTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
            GT G  T +  G +DISN  R+G +E   V+++ DG+  L+++EK L
Sbjct: 1058 GTGGVDTASTDGTFDISNLDRIGFSEVQLVQKVIDGVKILVEMEKKL 1104


>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 775

 Score =  144 bits (350), Expect = 4e-35
 Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 5/167 (2%)
 Frame = -1

Query: 625 LQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIE 446
           L  A   R WP  RGI+HN++K FL+W NEEDH R+ISMQ GGD++ V+ R    +N++E
Sbjct: 234 LTCAGMARDWPDARGIWHNDSKNFLIWVNEEDHTRVISMQQGGDMRSVFDRFCRGLNQVE 293

Query: 445 KKIPFSHHD-----RLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVR 281
             I    H+      LG++  CP+NLGT +RA VH+           L+ +  K  LQ R
Sbjct: 294 GLIKKKGHEFMWNQHLGYILTCPSNLGTGLRAGVHV-KLPNLGKDKRLDTILDKLRLQKR 352

Query: 280 GTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
           GT G  T A GG +DISN  R+G +E + V+++ DG+  LI +EK L
Sbjct: 353 GTGGVDTAAVGGTFDISNSDRLGYSEVELVQKVIDGVNLLIDMEKRL 399


>SB_8314| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
          Length = 309

 Score =  121 bits (291), Expect = 6e-28
 Identities = 71/173 (41%), Positives = 96/173 (55%), Gaps = 11/173 (6%)
 Frame = -1

Query: 625 LQAANACR-FWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEI 449
           +QAA+    FWP GRGI+ N+ KTFL W NE DHLRIISM+MGGD++ V+ RL      I
Sbjct: 131 MQAASGYHEFWPEGRGIFINKAKTFLNWINEGDHLRIISMEMGGDVKGVFTRLSRGAKAI 190

Query: 448 E--------KKIPFSHHDRLGFLTFCPTNLGTTVRASVHI--XXXXXXXXXXXLEEVASK 299
           E         K  F  H   G +T CPTN+GT +R SVHI             ++++  +
Sbjct: 191 EDGVKEATGAKDAFMMHPTFGSVTCCPTNIGTGMRGSVHILVPKLIAKIGFDAIDKICRE 250

Query: 298 YHLQVRGTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
            + Q RG+ GEH+E    + D+SN RR+G  EY  V +M   +  L + E  L
Sbjct: 251 RNCQARGSTGEHSEVIDRI-DVSNWRRIGFPEYQLVDDMIQCVNFLAEEEDKL 302


>SB_26353| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.9e-18)
          Length = 138

 Score =  105 bits (253), Expect = 2e-23
 Identities = 44/89 (49%), Positives = 64/89 (71%), Gaps = 5/89 (5%)
 Frame = -1

Query: 604 RFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIEKKI---- 437
           R WP GRG++H ++K+FL+W NEEDHLR+ISM+ GGDL++ Y+R    + E+E +I    
Sbjct: 43  RDWPDGRGVWHTKDKSFLIWVNEEDHLRVISMETGGDLERTYERFYRGLKELESRIQKFG 102

Query: 436 -PFSHHDRLGFLTFCPTNLGTTVRASVHI 353
             F  +  LG++  CP+NLGT +RASVH+
Sbjct: 103 HEFMRNRHLGYINTCPSNLGTGLRASVHV 131


>SB_8138| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
          Length = 383

 Score =  103 bits (247), Expect = 1e-22
 Identities = 61/157 (38%), Positives = 85/157 (54%), Gaps = 10/157 (6%)
 Frame = -1

Query: 580 IYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIE--------KKIPFSH 425
           ++ N+ KTFL W NE DHLRIISM+MGGD++ V+ RL      IE         K  F  
Sbjct: 221 VFINKAKTFLNWINEGDHLRIISMEMGGDVKGVFTRLSRGAKAIEDGVKEATGAKDAFMM 280

Query: 424 HDRLGFLTFCPTNLGTTVRASVHI--XXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAE 251
           H   G +T CPTN+GT +R SVHI             ++++  + + Q RG+ GEH+E  
Sbjct: 281 HPTFGSVTCCPTNIGTGMRGSVHILVPKLIAKIGFDAIDKICRERNCQARGSTGEHSEVI 340

Query: 250 GGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
             + D+SN RR+G  EY  V +M   +  L + E  L
Sbjct: 341 DRI-DVSNWRRIGFPEYQLVDDMIQCVNFLAEEEDKL 376


>SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 30/50 (60%), Positives = 37/50 (74%)
 Frame = -1

Query: 625 LQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYK 476
           L  A   R WP  RGI+HN+NK FLVW NEEDH R+ISMQ GGD++ V++
Sbjct: 575 LTCAGMARDWPDARGIWHNKNKNFLVWVNEEDHTRLISMQKGGDMRAVFE 624


>SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13)
          Length = 490

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
 Frame = -1

Query: 598 WPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIEKKIPFSHHD 419
           W +GRGI+ +     +   NE +H+  ++ + GGDL   + R+   V   E  +  + H 
Sbjct: 367 WSSGRGIWRDGTSNAIALVNEREHIIFLTQEFGGDLCHAFYRMRDLVERTELALEKTGHK 426

Query: 418 RL-----GFLTFCPTNLGTTVRASVHI 353
            +     GFL   P  +GT +R SV++
Sbjct: 427 YMHSVVYGFLVSSPQEVGTGLRISVNV 453


>SB_54113| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0.11)
          Length = 115

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = -1

Query: 271 GEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 140
           G++T     +YDISN  R+G TE   V+++ DG+  LIK+EK L
Sbjct: 58  GDNTPIREDIYDISNADRLGYTEVQLVQKVIDGVNLLIKMEKRL 101


>SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)
          Length = 394

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -3

Query: 509 ADGWRPAAGIQEAGERRQRDREEDPVLAPRPARLP 405
           AD  RPA G +E  +R +RD++ED     RPAR P
Sbjct: 258 ADQERPARGPRETSKRTKRDQQED---QERPARGP 289



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 512 DADGWRPAAGIQEAGERRQRDREEDPVLAPRPARLP 405
           + D  RPA G ++  +R +RD++ED     RPAR P
Sbjct: 117 EEDQERPAGGPRKTSKRTKRDQQED---QERPARGP 149



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 506 DGWRPAAGIQEAGERRQRDREED---PVLAPRPAR 411
           D  RPA G +E  +R +RD++ED   P   PR  R
Sbjct: 75  DQERPARGPRETSKRTKRDQQEDQERPAGRPRKTR 109


>SB_21327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -1

Query: 520 IISMQMGGDLQQVYKRLVSAVNEIEKKIP-----FSHHDRLGFLTFCPTNLGTTVRASVH 356
           +I    G DL   Y R    ++++E+++      F+  D LG++   P +LGT +   + 
Sbjct: 1   VICWSQGSDLFDTYDRFQRGLSQLEEELKQNDEEFALSDHLGYIVSDPRHLGTAMEVRMR 60

Query: 355 I 353
           +
Sbjct: 61  V 61


>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
          Length = 1052

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 135 AYRDFSILMSSAMPSYISLTASYS-VSPMRRLLEMSYTP--PSASVCSP 272
           +Y   S   S A PSY S + SYS  SP       SY+P  PS S  SP
Sbjct: 688 SYSPTSPSYSPASPSYTSASPSYSPASPSYSPTSPSYSPAIPSNSPASP 736


>SB_56605| Best HMM Match : WD40 (HMM E-Value=2.5e-12)
          Length = 630

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 479 QEAGERRQRDREEDPVLAPRPARLPHVLPDQPGH 378
           +++GE+ +RD  ++P+  P  +++P V     GH
Sbjct: 189 RKSGEKMERDNNDNPMPPPTSSKMPRVNSMNVGH 222


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 485  GIQEAGERRQRDREEDPVLAPRPARLPHVLPDQ---PGHHGPRL 363
            G+ E   +R   R   P L P P ++P +LP Q   PG  G +L
Sbjct: 2338 GVMEVSHQRFALRHPAPGLPPPPQQVPGILPGQVPLPGVDGQQL 2381


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +3

Query: 87  PASAER*INTQA-ARGGAYRDFSILMSSAMPSYISLTASYSVSPMR-RLLEMSYTPPSAS 260
           P +    + TQA A GG +    I  +  +PS  + T   S+SP     L  S  PP + 
Sbjct: 706 PGTTPTLLITQAPASGGGFVVNGIAQAVVLPSSTATTVQVSLSPRSGSTLATSVIPPGSP 765

Query: 261 VCSP 272
           V SP
Sbjct: 766 VRSP 769


>SB_11883| Best HMM Match : I-set (HMM E-Value=0)
          Length = 616

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 469 VSAVNEIEKKIPFSHHDRLGFLTFCPTNLGT 377
           VSA + +E K+PFS H      TFC T+  +
Sbjct: 84  VSAKSNLEIKVPFSFHHPYICPTFCRTSFAS 114


>SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 129 GGAYRDFSILMSSAMPSYISLTASYSVSPMRRLLEMSYTPPSASV 263
           GGA++ FS  +SS++ S  S T S + S  + +  +   PP  ++
Sbjct: 283 GGAFKAFSASVSSSISSSWSTTQSSTFSASKSVKHVLTIPPRTTI 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,385,507
Number of Sequences: 59808
Number of extensions: 241229
Number of successful extensions: 785
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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