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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30006
         (891 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)                     31   1.7  
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             30   2.9  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   5.1  
SB_7841| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_53815| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_4680| Best HMM Match : ATP_synt_H (HMM E-Value=7.7)                 29   5.1  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      29   6.7  
SB_17937| Best HMM Match : TTL (HMM E-Value=4.4e-07)                   29   6.7  
SB_51663| Best HMM Match : Phage_min_tail (HMM E-Value=4.1)            29   6.7  
SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)               28   8.8  

>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = +3

Query: 381 GAATVTVVVDPNTGERLPLDVAYGRGLIDPVSYKKYVLSVS-----DQKPGSITYHD--- 536
           G A + V  D +T   + + V Y  G    + Y+  V S++      +K   +   D   
Sbjct: 205 GTADLPVTRDGDTSTTVTISVTYTPGTATGLDYEDTVTSITFAPGDTEKFIQVPIVDDQL 264

Query: 537 IKSPSTSKVTFSQAPQNFETEP 602
           ++SP T KVT S    N  TEP
Sbjct: 265 VESPETFKVTISSTLPNVPTEP 286


>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 1958

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = +3

Query: 381  GAATVTVVVDPNTGERLPLDVAYGRGLIDPVSYKKYVLSVS-----DQKPGSITYHD--- 536
            G A + V  D +T   + + V Y  G    + Y+  V S++      +K   +   D   
Sbjct: 1532 GTADLPVTRDGDTSTTVTISVTYTPGTATGLDYEDTVTSITFAPGDTEKFIQVPIVDDQL 1591

Query: 537  IKSPSTSKVTFSQAPQNFETEP 602
            ++SP T KVT S    N  TEP
Sbjct: 1592 VESPETFKVTISSTLPNVPTEP 1613


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 441 VAYGRGLIDPVSYKKYVLSVSD-QKPGSITYHDIKSPSTSKVTFSQAPQNFETEPIN 608
           VA+   L DP S+ K +  + D    GS++Y + ++       +++ P NF++E I+
Sbjct: 753 VAFEALLRDPDSHHKLIFQLFDLDGKGSVSYDEFRNVIQKTTFYNKIPFNFDSEFIS 809


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 12   TLQQAIAKRIIDRKTGDYIDNSGNKFTLA 98
            TLQQ +  R+ +  T D++ NS +KFT A
Sbjct: 3547 TLQQGVVVRLRNTNTRDFLANSYHKFTSA 3575


>SB_7841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 225 VAYERGLVDPDTYKRYEEEIR 287
           V Y + + DP+  KRYEEEIR
Sbjct: 32  VEYAQEISDPENKKRYEEEIR 52


>SB_53815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 138 PLVAASKVIQVVRSTMVVDPQTGEKLPME-VAYERGLVDPDTYKRYEEEIRDR 293
           P+   + +  VV + + +        P+  + Y  GLV+P  Y  Y +E+R+R
Sbjct: 292 PVFTVTAIYSVVDTKVTLTESLAIDYPLALIVYANGLVNPIIYLYYSKELRNR 344


>SB_4680| Best HMM Match : ATP_synt_H (HMM E-Value=7.7)
          Length = 85

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 138 PLVAASKVIQVVRSTMVVDPQTGEKLPME-VAYERGLVDPDTYKRYEEEIRDR 293
           P+   + +  VV + + +        P+  + Y  GLV+P  Y  Y +E+R+R
Sbjct: 26  PVFTVTAIYSVVDTKVTLTESLAIDYPLALIVYANGLVNPIIYLYYSKELRNR 78


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 577  HLRTLRLNP*IYRIVKQLLFHIRPQNQYQ*VQLFLKDSLQ*NQFKIVYLLIT 732
            H R LR +P  YR+++   FH R    +  + +F    L    F ++ L IT
Sbjct: 1079 HYRVLRHHPFHYRVLRHHPFHYRVLRHHPFITVFSVIILFITVFSVIILFIT 1130


>SB_17937| Best HMM Match : TTL (HMM E-Value=4.4e-07)
          Length = 491

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 242 APFICYLHR*FFSRLWINYHSTPYNLNNFRSRN*RCTYNSYQTYFCSIC*SKFI 81
           AP   Y+ R F    W+ + + P+ L++F   +  CT  +Y T+      SK+I
Sbjct: 191 APLRLYVDRVF----WLRFANKPFALDHFEEYDRHCTVMNYGTHKLKQITSKYI 240


>SB_51663| Best HMM Match : Phage_min_tail (HMM E-Value=4.1)
          Length = 143

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 138 PLVAASKVIQVVRSTMVVDPQTGEKLPME-VAYERGLVDPDTYKRYEEEIRDR 293
           P+  A+ +  VV + + +      +  +  + Y  GLV+P  Y  Y +E+R+R
Sbjct: 84  PVFTATAIYSVVDTEITLSASLAIEYALTLIVYANGLVNPIIYLYYSKELRNR 136


>SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)
          Length = 601

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 21  QAIAKRIIDRKTGDYIDNSGNKFTLADAAKVGLIAVVGAPLVAASKVI 164
           QAI + +I  +T  Y D       +ADA+ VGL AV+        KV+
Sbjct: 332 QAIKRVMIASETLAYFDRQAETLVVADASPVGLGAVLIQKQGGTEKVV 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,048,575
Number of Sequences: 59808
Number of extensions: 466134
Number of successful extensions: 1151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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