Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0029
         (835 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29250| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.4e-07)        138   5e-33
SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   3e-09
SB_33803| Best HMM Match : Aminotran_1_2 (HMM E-Value=2.6e-26)         54   1e-07
SB_33262| Best HMM Match : DOMON (HMM E-Value=2.7e-28)                 45   7e-05
SB_22866| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_46250| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.6)              29   3.5  
SB_32655| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)                    29   6.1  
SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07)                 29   6.1  
SB_17419| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_49289| Best HMM Match : Homeobox (HMM E-Value=6e-30)                28   8.1  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_29250| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.4e-07)
          Length = 252

 Score =  138 bits (334), Expect = 5e-33
 Identities = 64/92 (69%), Positives = 74/92 (80%)
 Frame = +2

Query: 251 SSEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAG 430
           ++EVV AA+E L KYG GLSSVRFICGTQ IHK LE ++S+FHG ED ILY  C+DAN G
Sbjct: 2   NAEVVNAAKEALMKYGNGLSSVRFICGTQDIHKTLEAKISKFHGMEDAILYACCYDANTG 61

Query: 431 LFESMLTPEDAVFSDALNHASIIDGIGYARRR 526
           LFES+LT EDAVFSD LNHAS+IDGI   R +
Sbjct: 62  LFESLLTAEDAVFSDELNHASMIDGIRLCRAK 93



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +3

Query: 567 LVSAQRTRIKLIVTDGVFSMDGTVAPI 647
           L  A   RIKLI +DGVFSMDG++AP+
Sbjct: 130 LKEADGARIKLIASDGVFSMDGSMAPL 156



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 674 KYRALLVVDDSHATGFFRGNWAEGT*KSYCGVIG 775
           KY AL+ +D+ HATGF  G+   GT   Y G  G
Sbjct: 165 KYGALVFIDECHATGFL-GDTGRGT-DEYTGTRG 196


>SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
 Frame = +2

Query: 278 EGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESM--LT 451
           E +  +G G    R I GT S H++LE  L+Q H +E  +L+ SC+ AN     ++    
Sbjct: 248 ETIDVHGVGAGGTRNISGTSSYHEQLEKVLAQLHQKEAALLFTSCYVANDTTLYTLGKHL 307

Query: 452 PEDAVFSDALNHASIIDGI 508
           P   +FSDA NHAS+I GI
Sbjct: 308 PGCLIFSDAGNHASMIQGI 326


>SB_33803| Best HMM Match : Aminotran_1_2 (HMM E-Value=2.6e-26)
          Length = 391

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 26/80 (32%), Positives = 45/80 (56%)
 Frame = +2

Query: 266 EAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESM 445
           + A + + K G  + S R   GT  IH ELE  +++F G+E  +++G  F  N+     +
Sbjct: 123 DEAEKSVHKNGIAVCSARHEFGTLDIHIELEKMVARFVGKESAMVFGMGFATNSTNIPVL 182

Query: 446 LTPEDAVFSDALNHASIIDG 505
           ++  D + SD LNH+S++ G
Sbjct: 183 VSKGDLIISDELNHSSLVLG 202


>SB_33262| Best HMM Match : DOMON (HMM E-Value=2.7e-28)
          Length = 595

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 20/58 (34%), Positives = 35/58 (60%)
 Frame = +2

Query: 332 TQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDG 505
           T  IH ELE  +++F G+E  +++G  F  N+     +++  D + SD LNH+S++ G
Sbjct: 2   TLDIHIELEKMVARFVGKESAMVFGMGFATNSTNIPVLVSKGDLIISDELNHSSLVLG 59


>SB_22866| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 302 GLSSVRFICGT-QSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVF 469
           G +S + I GT + +H+E + R+ Q   + D  L+G+    N G  +    P +A++
Sbjct: 108 GSTSNKMIYGTNEMLHQENQRRVKQQQEKADGFLFGTDAATNVGKQQEKRKPNNALY 164


>SB_46250| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.6)
          Length = 190

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -2

Query: 267 STTSDDSISLNSCWHRSSGILLEHLG 190
           S T   S S NSC H  SG  LEH G
Sbjct: 128 SHTLSSSSSCNSCQHAQSGYTLEHRG 153


>SB_32655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 335 QSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAV 466
           Q++ K+L+  +++   +    +Y SC   N    ES+L P+D V
Sbjct: 340 QAVTKQLKETVNEIQDKIGKRIYESCVKGNLPSGESLLEPDDIV 383


>SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)
          Length = 832

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +3

Query: 60  RRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVRV 191
           R ++RAG AK R  +  R++++KR +  +H R +   +  K+R+
Sbjct: 372 RERQRAG-AKRRAAIRIRMEQLKRKRELEHARKIEFLRRQKLRI 414


>SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07)
          Length = 1002

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 296 GAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSC 412
           G+ LS + F      +  +L N +  F   +DTILY SC
Sbjct: 574 GSILSPMLFNLYVADLQDDLPNTVRSFQYADDTILYSSC 612


>SB_17419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 212 PELLCQQLFRLIESSEVVEAAREGLKKYGAGLSSVRFICGTQSI 343
           PEL   QL   +   +V   +R G+K++ + +S+   IC T SI
Sbjct: 118 PELFLTQLSPRLTPRDVGNISRPGIKRHDSNMSTTS-ICSTDSI 160


>SB_49289| Best HMM Match : Homeobox (HMM E-Value=6e-30)
          Length = 285

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 488 RGSKRPRTPRLQASAWTRTGL 426
           RG+ R RT  L A AWT TG+
Sbjct: 51  RGNLRTRTQSLSAVAWTSTGI 71


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 132  AKTWKHE-----RVLTSPQDTKVRVQGAQGEFLNFCANNYL 239
            AK WK       ++L++PQ  +VRV   + + L  CAN+ L
Sbjct: 1978 AKQWKERGIGDIKLLSNPQTGRVRVLMRRDQVLKICANHLL 2018


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,063,861
Number of Sequences: 59808
Number of extensions: 519317
Number of successful extensions: 1501
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)