Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0023
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             162   2e-40
SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   5.4  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  162 bits (394), Expect = 2e-40
 Identities = 73/85 (85%), Positives = 79/85 (92%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           H+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQ
Sbjct: 432 HMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQ 491

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
           RLIK+DGKVRTD TYPAGFMDVV++
Sbjct: 492 RLIKIDGKVRTDTTYPAGFMDVVTI 516



 Score =  132 bits (320), Expect = 2e-31
 Identities = 58/86 (67%), Positives = 72/86 (83%)
 Frame = +3

Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 434
           +KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTIRYPDP
Sbjct: 517 DKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDP 576

Query: 435 LIKVNDSIQLDIATTKIMDFIKFESG 512
            IKVND++ +DI T K++D+IKF++G
Sbjct: 577 NIKVNDTVVIDIKTGKVIDYIKFDTG 602



 Score =  108 bits (260), Expect = 4e-24
 Identities = 47/80 (58%), Positives = 60/80 (75%)
 Frame = +2

Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNIS 688
           GN+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGK  +  +S
Sbjct: 602 GNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVS 661

Query: 689 LPRGKGXXXXXXXXERDKRI 748
           LP+GKG        ERD+RI
Sbjct: 662 LPKGKG-VRLSIAEERDRRI 680


>SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 568 GHDGAHAPQVTASRDHTQVPDSNLMKSIIFVVAMSNWMESL 446
           G +  HA   +A   HT VP+SN   S  FV+ ++ ++ SL
Sbjct: 872 GREDYHAEDPSARLRHTPVPESNSAWSTSFVIGVAGFLVSL 912


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +3

Query: 123 EES--SEVCFDRKRSPENCE 176
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -2

Query: 200 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 84
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,909,748
Number of Sequences: 59808
Number of extensions: 596926
Number of successful extensions: 1820
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1815
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)