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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0007
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7977| Best HMM Match : MOZ_SAS (HMM E-Value=3.4e-21)                96   2e-20
SB_40014| Best HMM Match : Chromo (HMM E-Value=0.73)                   33   0.13 
SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0)                      33   0.13 
SB_21821| Best HMM Match : MRG (HMM E-Value=0)                         31   0.52 
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    31   0.69 
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_49389| Best HMM Match : JmjC (HMM E-Value=0.095)                    30   1.6  
SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           28   4.9  
SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)                   28   4.9  
SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012)                   28   6.4  
SB_33500| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)             28   6.4  
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_24737| Best HMM Match : KID (HMM E-Value=0.096)                     27   8.5  
SB_6456| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.5  

>SB_7977| Best HMM Match : MOZ_SAS (HMM E-Value=3.4e-21)
          Length = 570

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 51/78 (65%), Positives = 55/78 (70%)
 Frame = +2

Query: 284 RLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQKRKHDEINHVQKTYAE 463
           RLDEWV   RV     D+ +  +  I  D L  D   RKITRNQKRKHDEINHVQKTYAE
Sbjct: 57  RLDEWVEAARV-----DLQQNDDKPIIDDKLDVDGPERKITRNQKRKHDEINHVQKTYAE 111

Query: 464 MDPTTAALEKXHEAILKL 517
           MDPTTAALEK HEAI K+
Sbjct: 112 MDPTTAALEKEHEAITKI 129



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +1

Query: 508 SKVKYIDRDTNLENMEIDTWYFSPYP 585
           +K+K+ID+       EIDTWYFSPYP
Sbjct: 127 TKIKFIDK-AQFGKYEIDTWYFSPYP 151


>SB_40014| Best HMM Match : Chromo (HMM E-Value=0.73)
          Length = 153

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 257 YVHYVGYDRRLDEWVSRHRVMSDRFDV 337
           YVH++ +++RLDEWV+  R+   R  +
Sbjct: 72  YVHFIDFNKRLDEWVTEDRLDKTRIQL 98


>SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0)
          Length = 475

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 257 YVHYVGYDRRLDEWVSRHRVMSDRFDV 337
           YVH++ +++RLDEWV+  R+   R  +
Sbjct: 72  YVHFIDFNKRLDEWVTEDRLDKTRIQL 98


>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
          Length = 292

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 251 RNYVHYVGYDRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQKRK 424
           R  +HY G+++  DEWV   RV+    D   Q    +   +L + K+ +K  ++   K
Sbjct: 37  RYLIHYNGWNKNWDEWVPESRVLKYN-DANLQKQRELREQNLKSKKARKKQEKSDSEK 93


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 260 VHYVGYDRRLDEWVSRHRVM 319
           +HY G++ R DEW+S  RV+
Sbjct: 500 IHYAGWNNRYDEWISPDRVV 519


>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 529 RDTNLENMEIDTWYFSPYP 585
           R   L + EIDTWY SPYP
Sbjct: 451 RCIELGSYEIDTWYSSPYP 469


>SB_49389| Best HMM Match : JmjC (HMM E-Value=0.095)
          Length = 486

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 78  VNNELPNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDES 197
           ++ EL  P+ R  D ED + V E+PLD+ E +  +  D S
Sbjct: 442 IHGELNEPDVRRDDAEDEDEV-EEPLDLREDHERKGRDTS 480


>SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +2

Query: 221 VAIQYSGILLRNYVHYV-GYDRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHL--LTDKS 391
           V + Y G   RN VH + GYD   DE+ +   + SD+  +       +  D L  +TD S
Sbjct: 221 VFVFYPGEGYRN-VHVIRGYDTAADEYPNHLNLFSDKGGMIAVQEAKLFPDSLKPVTDLS 279

Query: 392 GRKITRNQKRKHD 430
           G    R  +R+H+
Sbjct: 280 GHGGERLAERRHN 292


>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 33  GIIMAKGDKELEKPIV-NNELPNPECRSTDNEDSESVPEQPLDIGE 167
           G    K D E++ P+  NN+L     +S+   + E   E+P +I E
Sbjct: 349 GTANPKADVEMDAPVESNNDLKQDVAQSSKTSEDECKSEEPFEIKE 394


>SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)
          Length = 351

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 54  DKELEKPIVNNELPNPECRSTDNEDSESVPEQPLDIGEHYL 176
           D+   KP+V  +   P  ++ +  D     + P D+ EHYL
Sbjct: 124 DEPPPKPLVKEKSKKPRAKNKEVFDLWGKEDTPKDVNEHYL 164


>SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012)
          Length = 882

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -3

Query: 460 GVSFLHMVYFVMFTFLIPCYFPAGFVREQVVAVYVIVRLLAYVEPI*HN 314
           G    H++ F  F F  P Y+PA  VR Q     V+ R   Y + + HN
Sbjct: 9   GERISHLLRFYYFYFGFPVYYPACIVRLQHFFRIVLQRSTDY-DKVIHN 56


>SB_33500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 221 VAIQYSGILLRNYVHYV-GYDRRLDEWVSRHRVMSD 325
           V + Y G   RN VH + GYD   DE+ S H + SD
Sbjct: 336 VFVFYPGEGYRN-VHVICGYDTAADEYPSHHNLFSD 370


>SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)
          Length = 186

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 45  AKGDKELEKPIVNNELPNPECRSTDNEDSESVPEQPL 155
           AK +KE EK   N E+P  E  + + E ++S P + L
Sbjct: 143 AKKEKEPEKDKTNMEVPPKEKATLNTEKTDSTPVETL 179


>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 3    AVLRDTIVVVGIIMAKGDKELEKPIVNNELPNPECRSTDNE 125
            A + DT V+ GI  A+  ++L KP+    LP+P C +  N+
Sbjct: 904  AHVSDTPVLCGINQARVMRQLTKPVECGNLPSP-CYAAINQ 943


>SB_24737| Best HMM Match : KID (HMM E-Value=0.096)
          Length = 636

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 392 GRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKXHEAILK 514
           G K+T++++ K DE+  V +T  E+       EK  + + K
Sbjct: 119 GEKLTKSEQEKSDELGKVWETMTELQSVIEDREKSIDKLEK 159


>SB_6456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 243 SCYEIMSIMSDMIEDSTNGC 302
           S Y +MSI+SD  ED  N C
Sbjct: 18  SYYHVMSIVSDSAEDIVNSC 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,850,682
Number of Sequences: 59808
Number of extensions: 378395
Number of successful extensions: 1383
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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