Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0030
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    29   4.6  
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)                      29   4.6  
SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_7966| Best HMM Match : DNA_ligase_A_C (HMM E-Value=4.8)             28   6.1  
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_37390| Best HMM Match : MARVEL (HMM E-Value=1.1e-08)                28   8.1  

>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 17  FLVTMMWKTVLITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKG 196
           FL  +     ++++   GV  D +S I  +V      N A D + EVE A R        
Sbjct: 284 FLKVLKGAGAVLSVIGIGV--DLYSIINTLVECDKKSNQAADAIKEVEKAEREVSKSETE 341

Query: 197 LVDLNV-LKTEIEE 235
           L D N  LKT + E
Sbjct: 342 LRDFNTELKTFMRE 355


>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
          Length = 1243

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -3

Query: 306 TAFQLSTLVTVLLENLVGAPFGLASSISVFRTFKSTSPLRQFP 178
           T+ ++  +   LLE+L   PFG+ S+ S+ + F S + L++FP
Sbjct: 444 TSLKVLKVTHNLLESL---PFGIQSASSLVKLFLSNNKLKEFP 483


>SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +3

Query: 339 CRQRICEPHQ*CPKQYQSTHRLCVLQGRRP---DCFVHRGRRP*VLPAKD*ESQDMLFKL 509
           C   I  P      + QS H   +L  RR    DCF+H    P +L   +     + F +
Sbjct: 210 CTPNIDSPEAQSVSREQSLHSFHMLFCRRCYKYDCFLHGSECPGLLRFNEPHQSSVGFTV 269

Query: 510 KQSFPTVESANNL 548
               PT +SA+ L
Sbjct: 270 LYQLPTKKSADEL 282


>SB_7966| Best HMM Match : DNA_ligase_A_C (HMM E-Value=4.8)
          Length = 199

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 563 FFNKAQVIGGFHSGEALFQFKKHVLR 486
           F  K ++ GG+HSG A + F K  LR
Sbjct: 36  FGRKFKMFGGYHSGGAGYVFSKETLR 61


>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 179 GNCLKGLVDLNVLKTEIEE 235
           GNCLKG+V++NV    IE+
Sbjct: 277 GNCLKGIVNVNVSPNIIEQ 295


>SB_37390| Best HMM Match : MARVEL (HMM E-Value=1.1e-08)
          Length = 196

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -1

Query: 572 FCAFFNKAQVIGGFHSGEALFQFKKHVLRFSVFCWKHSGPPSAMN 438
           +C F + A  +G F     +FQF   +L F++ C      P   N
Sbjct: 25  YCGFLDLAWPVGTFEGILKVFQFFTTLLTFAILCTAFKTDPYLKN 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,800,201
Number of Sequences: 59808
Number of extensions: 447250
Number of successful extensions: 1134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)