Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0028
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4064| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.17 
SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)                31   1.2  
SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)          30   1.6  
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)                      28   6.4  
SB_29796| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)                 28   6.4  
SB_24185| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-08)                 28   8.4  
SB_9588| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_1759| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-36)                  28   8.4  

>SB_4064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +2

Query: 221 CLS*NDTASRIPQIIIHTYLCNKIYKRSFCAPDNHIMGHQYTFNSDY---VAILII*NHK 391
           C S   T+  +P +++H Y CN+ Y  S  AP   ++ HQY  N  Y   +   ++    
Sbjct: 54  CTSITATSITVP-VLLHQYYCNQYYCTSITAP---VLLHQYYCNQYYCTSITAPVLLQPV 109

Query: 392 LFHWYF 409
           L H Y+
Sbjct: 110 LLHQYY 115


>SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)
          Length = 623

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +2

Query: 260 IIIHTYLCNKIYKRSFCAPDNHIMGHQYTFNSDYVAILII*NHKLFHWYF--*YICDLIK 433
           +++H Y CN+ Y  S  AP   ++ HQY   S    +L+     L H Y+   Y C  I 
Sbjct: 328 VLLHQYYCNQYYCTSITAP---VLLHQYYCTSITAPVLL--QPVLLHQYYCNQYYCTSIT 382

Query: 434 SSFNFPKNLFMEVYLLKI 487
           +       L  + Y   I
Sbjct: 383 APVLLQPVLLYQYYCTSI 400



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 239 TASRIPQIIIHTYLCNKIYKRSFCAPDNHIMGHQYTFNSDYVAILI 376
           T+  +P +++H Y CN+ Y  S  AP   ++ HQY   S    +L+
Sbjct: 507 TSITVP-VLLHQYYCNQYYCTSITAP---VLLHQYYCTSITAPVLL 548



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 260 IIIHTYLCNKIYKRSFCAPDNHIMGHQYTFNSDYVAILI 376
           +++H Y CN+ Y  S  AP   ++ HQY   S    +L+
Sbjct: 96  VLLHQYYCNQYYCTSITAP---VLLHQYYCTSITAPVLL 131


>SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)
          Length = 646

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 560 KHLCGLAPKTTAMRVNYPHEIYYCLFSKG 474
           K+L GL  K+T +   YP    YC+F+ G
Sbjct: 406 KYLTGLPAKSTNVSPTYPQSTIYCVFTVG 434


>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
          Length = 238

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +3

Query: 225 YHKMIQHLEYHKL*YIHICVIKYIKGLFVLPITILWVINIPLTVITLQF*LYKITNYSIG 404
           +H    H  +H L +I I +I  I  +  + ITI+ +I I + +IT+ F +  I   +  
Sbjct: 109 HHLDYDHHYHHDL-FIIIIIIIIITTIIFIIITIIIIIIIIIIIITIIFTIIIIITTTTT 167

Query: 405 TFDIYAI*LKVRLI 446
           T  I  I + + +I
Sbjct: 168 TIIIIIIIINIIII 181


>SB_29796| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
          Length = 362

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +3

Query: 306 FVLPITILWVINIPLTVITLQF*LYKITNYSIGTFDIYAI*LKVRLIF 449
           +++ ITI+WV+ I    I L   LYK+ +  +G   + A+   +R++F
Sbjct: 128 YIIAITIIWVLAIS---IELPVILYKLNSIQMGRSKLNALENYLRVVF 172


>SB_24185| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-08)
          Length = 774

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 303 LFVLPITILWVINI 344
           +FVLP+TI+W IN+
Sbjct: 416 IFVLPVTIMWYINL 429


>SB_9588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = +3

Query: 249 EYHKL*YIHICVIKYIKGLFVLPITILWVINIPLTVITLQF*LYKITNYSIGTFDIYAI 425
           +YH++  I I +IK    + +   TI   INIP T+IT+      IT  SI T    AI
Sbjct: 63  QYHQITTITITIIKITITITITITTIAININIP-TIITIITIAINITINSIITIRTIAI 120


>SB_1759| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-36)
          Length = 401

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 608 STCHKKRACIGNAIVLFYHESKTLQSETG 694
           S+C ++R C G +    YH++ T+ S  G
Sbjct: 350 SSCRRQRNCTGGSSSSIYHQAVTVLSSAG 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,003,889
Number of Sequences: 59808
Number of extensions: 493193
Number of successful extensions: 1012
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)