Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0025
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)                 30   1.5  
SB_2063| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_24326| Best HMM Match : DENN (HMM E-Value=0)                        29   4.5  
SB_54208| Best HMM Match : fn3 (HMM E-Value=0)                         28   5.9  
SB_45488| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   28   7.8  

>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
          Length = 459

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 485 QSKCARLTPLPIY*ECYYL*SDRCRKIIIHISKSVILPIKDMSISYC 625
           Q   + LT L +Y  CY L S    K  I  SKS +LP++ + ++ C
Sbjct: 313 QGIISTLTSLNLY-SCYLLASKEMEKFFIPDSKSNVLPLQTLILNGC 358


>SB_2063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 150 YKNTLNWRYACSLNVIWYLCWKTKLLIF 67
           Y+N++ W +   LN +WY    TKL  +
Sbjct: 24  YENSITWVFVLHLNGLWYYLVATKLCCY 51


>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
          Length = 1281

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 491 STDIGGRGTARVQCCRCERDRASAYSAVWLSKH 393
           S DI G   A +Q CR  R  A   S +WL ++
Sbjct: 617 SGDINGATPAAIQVCRSARQGACGPSVMWLPQY 649


>SB_54208| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1292

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 554 SDLITDSNTLSI*GVE*VGRTSTDIGGRGTARVQCCRCERD 432
           S ++ D   L++  +E   RT   +G  G    + CRC+R+
Sbjct: 868 SSVLRDLRALAVYRIEVAARTRRGVGPAGVTFGETCRCKRN 908


>SB_45488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 567

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 153 CYKNTLNWRYACSLNVIWYLCWKTKLL-IFLQK 58
           CY ++L WR   ++N+I  L  +TK L +F+ K
Sbjct: 362 CYPHSLTWRRDVTVNLILVLKHQTKFLKLFIDK 394


>SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 424 DALSRSHLQHWTRAVPLPPMSVEVRPTHSTPYILRVLLSVIRSL 555
           D     HL+    A  LPP    VRP  + P    VL S++R+L
Sbjct: 394 DKTPACHLRFCGNAGGLPPPPTTVRPPFTRPNKCHVLRSLLRAL 437


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = -2

Query: 180 LHYIAFIYYCYKN---TLNWRYACSLNVIW 100
           L  I F+++CYKN    + W   C  N  W
Sbjct: 547 LGLIIFLFHCYKNPKARMFWAQCCQKNACW 576


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,057,423
Number of Sequences: 59808
Number of extensions: 394653
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)