Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0016
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)        51   8e-07
SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   3e-05
SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.41 
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)                      31   0.72 
SB_8486| Best HMM Match : Granulin (HMM E-Value=0)                     29   2.9  
SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8)              28   6.7  
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)                28   6.7  
SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)                 28   6.7  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   8.9  
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_7247| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)
          Length = 167

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 21/67 (31%), Positives = 37/67 (55%)
 Frame = +3

Query: 279 EVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTVEVKWELQ 458
           EV G+I  + +PFPL   + C+++G+ CP+  G  A     + +   YP + + +K+EL+
Sbjct: 74  EVFGIIGGVQVPFPLKNPNVCENHGVKCPINAGDSATLDLNIYVSNLYPSLKLIIKFELK 133

Query: 459 SEHGDLV 479
                LV
Sbjct: 134 GGDNKLV 140


>SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +3

Query: 258 NIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTV 437
           ++ R     H +I  +P+P P+P SDAC+  GL+CP+  G  + +K    I   +P   +
Sbjct: 67  DLKRAKLSAHAIIDKLPLPLPIP-SDACQGYGLSCPVDSGVKSMFKIHQAIESEFPVGNL 125

Query: 438 EVK 446
            +K
Sbjct: 126 TLK 128



 Score = 36.7 bits (81), Expect = 0.019
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +1

Query: 73  MLFFITAAVLLASAEAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTP 252
           ++F   A ++ +S +   ++DCGS+   +  + +S C+  S  C+LKR T     L F P
Sbjct: 7   VVFAFAAMLVPSSTKTIKYRDCGSQEGEIVGMDISPCD--SEPCVLKRGTSVDGSLTFIP 64


>SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +3

Query: 267 RINTEVHGVIM--NIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTVE 440
           RI+  V+ V+   N  +  P+  S     N + C +K   +   +   P+  +   V VE
Sbjct: 395 RIDPLVNDVLQWTNASLGRPVDVSQTSNGNAVACQVKAINMTVRELVKPMFSACADVCVE 454

Query: 441 VKWELQSEHGDLV 479
           V WE +SEH  LV
Sbjct: 455 VSWE-ESEHQCLV 466


>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 919

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 248 HHSQHRSHKYRSSRGH 295
           HH  HR HK+RSS GH
Sbjct: 440 HHHHHRHHKHRSSSGH 455


>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
          Length = 878

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = +3

Query: 318 PLPESDACKD------NGLTCPLKEGTLADYKATLPILKSYP 425
           PLP +  C D      NG TC    GT ++  + LP+ K  P
Sbjct: 372 PLPNAVCCDDGVHCCPNGYTCNSSSGTCSEGDSVLPLFKKTP 413


>SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8)
          Length = 171

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 348 NGLTCPLKEGTLADYKATLPILKSYPKVTVEV 443
           N +   +KEGTL D++ATLP    Y  + VE+
Sbjct: 53  NKMYVAVKEGTLTDFRATLP--SHYLGINVEL 82


>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
          Length = 138

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 248 HHSQHRSHKYRSSRGHHEH 304
           HH QH  H++     HH H
Sbjct: 49  HHHQHNHHQHHHHHNHHHH 67


>SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)
          Length = 340

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 348 NGLTCPLKEGTLADYKATLPILKSYPKVTVEV 443
           N +   +KEGTL D++ATLP    Y  + VE+
Sbjct: 53  NKMYVAVKEGTLTDFRATLP--SHYLGINVEL 82


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 248 HHSQHRSHKYRSSRGHHEH 304
           HH  +R H+++  R HH H
Sbjct: 97  HHQHYRHHRHQHYRHHHHH 115


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +2

Query: 221 QTPRSACSLHHSQHRSHKYRSSRGHHEH 304
           + PR     HH  H  H +     HH H
Sbjct: 251 KNPRHRYHHHHHHHHQHNHHQHHHHHHH 278


>SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 252 THNIDRINTEVHGVIMNIPIPFP-LPESDACKDNGLTCPLKEGTLADYK 395
           + N D+ N EV   I   P   P   E+  CK   L  PLK G   D K
Sbjct: 505 SENADKENQEVPSAIKPAPKQRPSAKETRKCKRKALGKPLKAGLFEDKK 553


>SB_7247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = +2

Query: 248 HHSQHRSHKYRSSRGHHE-HPDTVP 319
           HH  H  H Y +   HH+ HP   P
Sbjct: 30  HHHHHHYHHYHNRHHHHQLHPQPPP 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,914,158
Number of Sequences: 59808
Number of extensions: 460467
Number of successful extensions: 1315
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)