Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0032
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_50821| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)               27   8.6  

>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 23/83 (27%), Positives = 34/83 (40%)
 Frame = +3

Query: 33   TGVRISLAGTNFSNEIRTQQMFTIDFHGEGITSCNKNQTRKIIICVITGGRTSCESARVG 212
            T V  S+ GT  S  + T          +G T    +  R   + + TGG T+   +  G
Sbjct: 1185 TAVPRSMDGTT-SAPMSTDGTTIASMSTQGTTVSPMSMDRTTAVPISTGGTTTAPRSTDG 1243

Query: 213  TTAPPISAVKQ*CVSV*RVGQPL 281
            T A P+S      V + R+ Q L
Sbjct: 1244 TAAAPMSTDGTTAVPIIRMEQLL 1266


>SB_50821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -2

Query: 286 SHNGCPTLQTETHYCFT---AEIGGAVVPTRADSQEVLPP 176
           SH  C   +TE+  CFT    E      PT+ +S   L P
Sbjct: 32  SHRVCTPTKTESQSCFTPTKTESQSCFTPTKTESPSCLHP 71


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +3

Query: 33   TGVRISLAGTNFSNEIRTQQMFTIDFHGEGITSCNKNQTRKIIICVITGGRTSCESARVG 212
            T V +S  GT  +  I T          +G T+   N      + + T G T+   +  G
Sbjct: 2189 TAVPMSTDGTTAA-PISTDGTTAAPMSTDGTTAAPMNMDGTTAVPISTDGTTAAPMSTDG 2247

Query: 213  TTAPPIS 233
            TTA P+S
Sbjct: 2248 TTAVPMS 2254


>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
          Length = 173

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 126 TSCNKNQTRKIIICVITGGRTSCESAR 206
           T+C+K + R   IC + GGR  C   R
Sbjct: 102 TACSKVRCRGNSICKVAGGRARCVPLR 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,528,986
Number of Sequences: 59808
Number of extensions: 286442
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)