Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0025
(644 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 36 0.037
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 33 0.15
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8) 31 0.80
SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072) 31 0.80
SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8) 31 0.80
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.80
SB_40765| Best HMM Match : DX (HMM E-Value=1.4) 31 0.80
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.80
SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1) 31 1.1
SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6) 30 1.9
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_28132| Best HMM Match : Peptidase_C1 (HMM E-Value=4.8e-09) 29 2.4
SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4) 29 2.4
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 29 3.2
SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 29 3.2
SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 29 3.2
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 29 3.2
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 3.2
SB_39121| Best HMM Match : Band_41 (HMM E-Value=1.7e-08) 29 4.3
SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5) 29 4.3
SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3) 29 4.3
SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 29 4.3
SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 29 4.3
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 5.7
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_19530| Best HMM Match : EMI (HMM E-Value=3.5) 28 5.7
SB_2407| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_34611| Best HMM Match : rve (HMM E-Value=6.6e-22) 28 7.5
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17) 27 9.9
SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 27 9.9
SB_2895| Best HMM Match : RnaseH (HMM E-Value=3.1) 27 9.9
SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22) 27 9.9
SB_47235| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 27 9.9
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 27 9.9
SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 9.9
SB_42289| Best HMM Match : RVT_1 (HMM E-Value=5.2e-17) 27 9.9
SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17) 27 9.9
SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17) 27 9.9
SB_27043| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_25628| Best HMM Match : RVT_1 (HMM E-Value=0.17) 27 9.9
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 35.5 bits (78), Expect = 0.037
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVLNGRQW 637
SR H L+++ + F F P TIR WN LP V D+ FK L ++ +W
Sbjct: 1627 SRRHSRTYHQLQANILAFNYSFFPRTIRTWNLLPAEVV-NAADLPSFKSALAPAISELKW 1685
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +2
Query: 449 RHRSRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRV 619
R R HP PL +S+ F TI WN LP +F E + FK + R+
Sbjct: 823 RKTRRSHPESFIPLSTSSASEHLSFFSRTIIQWNNLPALLFNEPCSLPIFKDKISRL 879
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 31.9 bits (69), Expect = 0.46
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDL 610
SR H L+++ + F F P TIR WN LP V D+ FK L
Sbjct: 1073 SRRHSRTYHQLQANILAFNYSFFPRTIRTWNLLPAEVV-NAADLPSFKSAL 1122
>SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 174
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 473 YYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVLNGRQ 634
YY E +++ ++ F P TIR WN LP + E + FKRDL LN +
Sbjct: 123 YYQE--KATKNKYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDLEIYLNNNK 173
>SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072)
Length = 375
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 473 YYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVLNGRQ 634
YY E +++ ++ F P TIR WN LP + E + FKRDL LN +
Sbjct: 324 YYQE--KATKNKYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDLEIYLNNNK 374
>SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 361
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 473 YYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVLNGRQ 634
YY E +++ ++ F P TIR WN LP + E + FKRDL LN +
Sbjct: 310 YYQE--KATKNKYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDLEIYLNNNK 360
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 473 YYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVLNGRQ 634
YY E +++ ++ F P TIR WN LP + E + FKRDL LN +
Sbjct: 530 YYQE--KATKNKYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDLEIYLNNNK 580
>SB_40765| Best HMM Match : DX (HMM E-Value=1.4)
Length = 278
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 473 YYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVLNGRQ 634
YY E +++ ++ F P TIR WN LP + E + FKRDL LN +
Sbjct: 227 YYQE--KATKNKYFYSFFPRTIRHWNTLPNELV-ELDSIEHFKRDLEIYLNNNK 277
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 473 YYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVLNGRQ 634
YY E +++ ++ F P TIR WN LP + E + FKRDL LN +
Sbjct: 615 YYQE--KATKNKYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDLEIYLNNNK 665
>SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1)
Length = 243
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +2
Query: 455 RSRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVL 622
RSR + ++S+ + F P TIR WN LP V E + FK VL
Sbjct: 177 RSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVV-ESSSIDSFKSSALPVL 231
>SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)
Length = 231
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 467 HPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPER 580
H + L + T ++ FLP +RLWN LP V R
Sbjct: 184 HSEFYTILNARTDIYKYSFLPRALRLWNNLPQSVIDMR 221
>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 521 FLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVLNGRQ 634
F P TIR WN LP + E + FKRDL LN +
Sbjct: 787 FFPRTIRHWNTLPNELV-ELGSIEHFKRDLEIYLNNNK 823
>SB_28132| Best HMM Match : Peptidase_C1 (HMM E-Value=4.8e-09)
Length = 160
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 596 RRTCHSARETPVGGAHSKAGWYLVKNTFGN 507
R+T H+ G HS A ++L+KN++G+
Sbjct: 67 RKTNHAVLTIGYGSQHSNASYWLIKNSWGH 96
>SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)
Length = 443
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELP 559
+R H + L S+ + F F P IR WN LP
Sbjct: 262 TRRHSLSFQQLHSNILSFNYSFFPRAIRAWNLLP 295
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVL 622
SR + ++S+ + F P TIR WN LP V E + FK VL
Sbjct: 853 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVI-ESSSIDSFKSSALPVL 906
>SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 198
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVL 622
SR + ++S+ + F P TIR WN LP V E + FK VL
Sbjct: 133 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVI-ESSSIDSFKSSALPVL 186
>SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPV 568
+R H + L+S+ + + F P IR+WN LP V
Sbjct: 122 TRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNV 158
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVL 622
SR + ++S+ + F P TIR WN LP V E + FK VL
Sbjct: 772 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVI-ESSSIDSFKSSALPVL 825
>SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 506
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPV 568
+R H + L+S+ + + F P IR+WN LP V
Sbjct: 441 TRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNV 477
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPV 568
+R H + L+S+ + + F P IR+WN LP V
Sbjct: 1427 TRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNV 1463
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPV 568
+R H + L+S+ + + F P IR+WN LP V
Sbjct: 387 TRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNV 423
>SB_39121| Best HMM Match : Band_41 (HMM E-Value=1.7e-08)
Length = 558
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 398 HVT-IKFNITWNKLRTVIRPQSKIRIVLWVPET*HTYLYTFK 276
HVT + F TW ++ V + K+R+ L+ + + LY F+
Sbjct: 490 HVTNLLFEFTWREIPVVRNEKKKLRLALYSKQLNSSKLYAFR 531
>SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5)
Length = 284
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVL 622
SR + ++S+ + F P TIR WN LP V E + FK VL
Sbjct: 219 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPAQVV-ESSSIDSFKSSALPVL 272
>SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3)
Length = 243
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVL 622
SR + ++S+ + F P TIR WN LP V E + FK VL
Sbjct: 178 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVV-ESSSIDSFKSSALPVL 231
>SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 455 RSRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPER 580
R++ +Y P + T ++ FLP +RLWN LP V R
Sbjct: 182 RTQHSEFYTIP-NARTDIYKYSFLPRALRLWNNLPQSVIDMR 222
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 467 HPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVLNGR 631
HP + + + T F+ F+P IRLWN L V Y F DL +L +
Sbjct: 730 HPEHYDIPYARTNIFKYSFVPRAIRLWNSLEVTVVLAAY--FFLLYDLATLLGAK 782
>SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 152
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVL 622
SR + ++S+ + F P TIR WN LP V E + FK VL
Sbjct: 87 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVV-ESSSIDSFKSSALPVL 140
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 534 PSGFGMSSPHRCFPSAMTCPSSNETC 611
P G+ + +P+RC S +C SS C
Sbjct: 2150 PQGYRLENPYRCVLSNASCASSEFAC 2175
>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 467 HPYYLEPLRSSTMRFQRYFLPGTIRLWNELP 559
HP + T F+ F P IR+WN LP
Sbjct: 616 HPQRFALVSCKTNVFKESFFPHAIRMWNGLP 646
>SB_19530| Best HMM Match : EMI (HMM E-Value=3.5)
Length = 244
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 467 HPYYLEPLRSSTMRFQRYFLPGTIRLWNELP 559
HP + T F+ F P IR+WN LP
Sbjct: 198 HPQRFALVSCKTNVFKESFFPHAIRMWNGLP 228
>SB_2407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 521 FLPGTIRLWNELPPPVFPERYDMSFFKRDLCRVLNGRQW 637
F P +I+ WN LP P+ + F ++ +++ QW
Sbjct: 195 FFPWSIKFWNNLPAPITDIKEKGKFKEKLQQHLIDNGQW 233
>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 212 AHHTNVYPMRGIEPTTLGGTVGGANYCTTESVNN 111
A HT Y G P + G + GAN+CT + V N
Sbjct: 788 ATHTLYYDNTG-SPWEVAGALEGANFCTEDEVWN 820
>SB_34611| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 875
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 470 DELYSGGGRCDIKNEMMESSRTTPHVTIKFNITWNKLR 357
D L GG +C++ ++M+ + + + +KFN KLR
Sbjct: 142 DVLIHGGNQCELDDKMIAVLKRSREIGLKFNPRKAKLR 179
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPERYDMSFFK 601
SR + ++S+ + F P TIR WN LP V E + FK
Sbjct: 544 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVI-ESSSIDSFK 590
>SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 938
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 470 DELYSGGGRCDIKNEMMESSRTTPHVTIKFNITWNKLR 357
D L GG +C++ ++M+ + + + +KFN KLR
Sbjct: 273 DFLIHGGNQCELDDKMIAVLKRSREIGLKFNPRKAKLR 310
>SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Frame = +3
Query: 495 HLQCVSKGIFYQ----VPSGFGMSSPH--RCFPSAM--TCPSSNETCV 614
HLQC+SK ++ Q P +G+ PH C M TC CV
Sbjct: 33 HLQCISKNLYNQDNTRTPVPYGVLDPHMGTCSKDRMCETCGKGLADCV 80
>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
Length = 1432
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 470 DELYSGGGRCDIKNEMMESSRTTPHVTIKFNITWNKLR 357
D L GG +C++ ++M+ + + + +KFN KLR
Sbjct: 489 DFLIHGGNQCELDDKMIAVLKRSREIGLKFNPRKAKLR 526
>SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 609
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 470 DELYSGGGRCDIKNEMMESSRTTPHVTIKFNITWNKLR 357
D L GG +C++ ++M+ + + + +KFN KLR
Sbjct: 511 DFLIHGGNQCELDHKMIAVLKRSREIGLKFNPRKAKLR 548
>SB_2895| Best HMM Match : RnaseH (HMM E-Value=3.1)
Length = 342
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 470 DELYSGGGRCDIKNEMMESSRTTPHVTIKFNITWNKLR 357
D L GG +C++ ++M+ + + + +KFN KLR
Sbjct: 60 DFLIHGGNQCELDDKMIAVLKRSREIGLKFNPRKAKLR 97
>SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 800
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 470 DELYSGGGRCDIKNEMMESSRTTPHVTIKFNITWNKLR 357
D L GG +C++ ++M+ + + + +KFN KLR
Sbjct: 321 DFLIHGGNQCELDDKMIAVLKRSREIGLKFNPRKAKLR 358
>SB_47235| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 378
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 470 DELYSGGGRCDIKNEMMESSRTTPHVTIKFNITWNKLR 357
D L GG +C++ ++M+ + + + +KFN KLR
Sbjct: 142 DFLIHGGNQCELDHKMIAVLKRSREIGLKFNPRKAKLR 179
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 458 SRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPV 568
SR + ++S+ + F P TIR WN LP V
Sbjct: 440 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEV 476
>SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1554
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 560 GGAHSKAGWYLVKNTFGNAL*MTAVALDSMDELYSGGGRCDIKNEMMESSR 408
G S++G+Y ++ G+ L V EL+SG +C NE+ E R
Sbjct: 556 GCTQSRSGYYFYLDSIGSPL----VICQPRHELHSGKYKCIATNELGEDQR 602
>SB_42289| Best HMM Match : RVT_1 (HMM E-Value=5.2e-17)
Length = 429
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 470 DELYSGGGRCDIKNEMMESSRTTPHVTIKFNITWNKLR 357
D L GG +C++ ++M+ + + + +KFN KLR
Sbjct: 227 DFLIHGGNQCELDDKMIAVLKRSREIGLKFNPRKAKLR 264
>SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17)
Length = 890
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 470 DELYSGGGRCDIKNEMMESSRTTPHVTIKFNITWNKLR 357
D L GG +C++ ++M+ + + + +KFN KLR
Sbjct: 321 DFLIHGGNQCELDHKMIAVLKRSREIGLKFNPRKAKLR 358
>SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
Length = 649
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 470 DELYSGGGRCDIKNEMMESSRTTPHVTIKFNITWNKLR 357
D L GG +C++ ++M+ + + + +KFN KLR
Sbjct: 545 DFLIHGGNQCELDDKMIAVLKRSREIGLKFNPRKAKLR 582
>SB_27043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 470 DELYSGGGRCDIKNEMMESSRTTPHVTIKFNITWNKLR 357
D L GG +C++ ++M+ + + + +KFN KLR
Sbjct: 83 DFLIHGGNQCELDDKMIAVLKRSREIGLKFNPRKAKLR 120
>SB_25628| Best HMM Match : RVT_1 (HMM E-Value=0.17)
Length = 526
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 470 DELYSGGGRCDIKNEMMESSRTTPHVTIKFNITWNKLR 357
D L GG +C++ ++M+ + + + +KFN KLR
Sbjct: 188 DFLIHGGNQCELDHKMIAVLKRSREIGLKFNPRKAKLR 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,136,128
Number of Sequences: 59808
Number of extensions: 416640
Number of successful extensions: 965
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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