Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0015
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 31 1.1
SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_41641| Best HMM Match : PT (HMM E-Value=3.1) 30 1.5
SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 2.0
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05) 29 3.5
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_53564| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 28 8.0
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 115 TWSKATKTSQ--RKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAK 264
T +KA K ++ +KP +K K K+ SS + P+ PT SR + KAK
Sbjct: 1897 TTAKALKKAKGKQKPGSATKKTKPKQDSSKKKRKRSPSPPTSASREGTRKAK 1948
>SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 401 IRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPE-PVW-SEPT 538
+RE+ P+ PQ+P G++ R Q P ++ P RP+ PV +EPT
Sbjct: 1002 VREAEPTKRPQVPVGGAEPTKR--PQDPNGQAEPTKRPQAPVGEAEPT 1047
>SB_41641| Best HMM Match : PT (HMM E-Value=3.1)
Length = 873
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 401 IRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPE-PVW-SEPT 538
+RE+ P+ PQ+P G++ R Q P ++ P RP+ PV +EPT
Sbjct: 526 VREAEPTKRPQVPVGGAEPTKR--PQDPNGQAEPTKRPQAPVGEAEPT 571
>SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -2
Query: 276 CYTDFGLGTAIATDSGRLGWRVEPMLCTADFLALAFAIEFDRLALACFCGFGPCQ*PHRL 97
CYT+ LGTA+ + +E FL I +R A+ + +
Sbjct: 94 CYTE--LGTAVQKSGAEYAYLMEAFGPIPAFLFAWTGIIINRPAITAIVSLIFAEYVAKP 151
Query: 96 FFPECGEPFVVPTALSLC*LV 34
FFPEC P V L L +V
Sbjct: 152 FFPECAPPPAVVKLLGLACIV 172
>SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 943
Score = 29.9 bits (64), Expect = 2.0
Identities = 29/91 (31%), Positives = 36/91 (39%)
Frame = -2
Query: 657 FGSFAQYCVHTAQFARVIDFDY*QHIGLDSEIDPALGHS*VGSLHTGSGLATGPDFGSGN 478
+GS C T+ R+ F +I S PA S G L+ G A GPD G G
Sbjct: 507 YGSSQSVCSRTSGGIRIGGFIPDYNIRATSIYAPAYTGS-SGRLNGPFGWAVGPDAGDGE 565
Query: 477 CSVALETDFEPDRGSCGSALGIDSLIVGQSF 385
LE DF CG A+ +I F
Sbjct: 566 ---YLEVDFGYPVVLCGMAIQGSGVIKNNEF 593
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/64 (21%), Positives = 29/64 (45%)
Frame = +1
Query: 73 RFSTFRKK*SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRS 252
+ S ++++ S+ WS K +KP L + +K + + HG + T + + R
Sbjct: 2517 QLSNYKRRWHKSSIAWSSFEKRQLQKPSSLQQSKKKDDPAGGSHGKNRSTSFSGEKKKRP 2576
Query: 253 SKAK 264
A+
Sbjct: 2577 KSAQ 2580
>SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1326
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = -2
Query: 582 IGLDSEIDPALGHS*VGSLHTGSGLATGPDFGSGNCSVALETDFEPDRGSCGSALGIDSL 403
+G+D+++ + + VG G+ T G V ++TD G +G+D+L
Sbjct: 1221 VGVDTDVVTGVDNLVVGVETLVVGVDTDVVTGVDTLVVGVDTDVVT--GVDTLVVGVDTL 1278
Query: 402 IVGQSFETVLGFET 361
+VG + V+G ET
Sbjct: 1279 VVGVDTDVVVGVET 1292
>SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05)
Length = 397
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 127 ATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSK 258
A +T RKP+ L R +E+ H + PTR+ + +S+
Sbjct: 175 AIQTPPRKPVNLTRSGSSEELLEKSTTSHKTSSPTRMFKRATSE 218
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 136 FLWLWTMSMTPPIIFSGMWRTFRGSNSAVVVLISTTKSMTSEDS 5
FL++ S T PI++S +TFR + ++ + ST +S +S S
Sbjct: 634 FLFVLVNSCTNPILYSWRLKTFRNALKKLLGIKSTRQSSSSSTS 677
>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 404 RESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPEPVWS 529
R +P+A P +P G ++ + + FP P +P+P S
Sbjct: 215 RPVVPTARP-IPNGGEETTTATNQAFPRLPPPPAKKPKPAVS 255
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 410 SIPSAEPQLPRSGSKSVSRATEQFPEPKS--GPVARPEPVWSEPT*LCPRA 556
S+ PQLPR + S ++ P PK PV RP V + P + PRA
Sbjct: 202 SVEPGLPQLPRPRTNSSNKKKSAPPLPKHVVSPVKRPNKVKAPPP-IPPRA 251
>SB_53564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Frame = +1
Query: 139 SQRKPIKLNRKR-------KCKEISSTQHGLHPPTKPTRVSRNRSSKAKISITIMLIILL 297
S++KP+K + R ++ S + GL+ KP + ++R + A I++ I L ++L
Sbjct: 159 SRKKPVKSGKSRISSIQYTHSRQRSQSSCGLYKSVKPVQSGKSRFASAMIALPIKLQVVL 218
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2
Query: 314 PSYS*SNNSKPGQLWWVSNPRTVSKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPK 493
P YS +S Q ++S+P + S P+ S P +EP+LP +S + T Q
Sbjct: 967 PEYSSPPSSS--QSTFLSSPSSTSLQQPS-PSSQPHSEPRLPSPSLESSTLQTSQLSNDS 1023
Query: 494 SGPVARPEP 520
P+P
Sbjct: 1024 PNSYTAPQP 1032
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,881,305
Number of Sequences: 59808
Number of extensions: 380457
Number of successful extensions: 1410
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -