Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0013
         (384 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)              27   5.2  

>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 31  IMILCCEVVFQSVLMDETTFI*WNR 105
           + +L CE V Q V+ D+T F+ WNR
Sbjct: 181 LRVLLCEPVKQGVIDDDTIFV-WNR 204


>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
          Length = 1487

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -2

Query: 161  WNTVSLFTYS*FYQNRKEIR---FHYIKVVSSIKTD*KTTSQHKIMMVITVRGLKM 3
            W TV+L T + FY+ R++ R    H++ V   + TD     +  +MM+I +  L+M
Sbjct: 1041 WKTVALSTLNPFYRQRRDFRKEKQHFLHVTDHV-TD-HVCYRIVMMMIIDLMLLRM 1094


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,743,973
Number of Sequences: 59808
Number of extensions: 193710
Number of successful extensions: 345
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)