Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0012
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1177| Best HMM Match : PEARLI-4 (HMM E-Value=0.46)                  93   1e-19
SB_36904| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_32685| Best HMM Match : RCSD (HMM E-Value=0.18)                     29   3.5  
SB_19550| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)                       28   8.0  
SB_29054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_1177| Best HMM Match : PEARLI-4 (HMM E-Value=0.46)
          Length = 576

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 47/90 (52%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
 Frame = +1

Query: 19  LSDRLYFATLKTGYKPKPTRNSKYFHIEDEIVYENFYFDFGPYHLCHLYQFCKKLNEELD 198
           + DRLYFAT +  +KP  T +  YF I+DE++YENFY DFGP +L  LY++  KLN++L 
Sbjct: 57  IKDRLYFATFR--HKPHSTSHIHYFSIDDELIYENFYADFGPLNLAMLYRYSCKLNKKLK 114

Query: 199 RNP--KKKIVYYTSNNENLRLNAAYLIGSY 282
                KKKIV++TS +   R NAA LIGSY
Sbjct: 115 SFSLGKKKIVHFTSTDSRKRANAACLIGSY 144


>SB_36904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
 Frame = +1

Query: 136 FGPYHLCHLYQFCKKLNEELDRNP-KKKIVYYTSNNENL-----RLNAAYLIGSYQVCSL 297
           FGP +L  +Y+FC  +N +L   P  KKIV YT+  ++L     R  A +L G++ VC L
Sbjct: 11  FGPSNLAGIYRFCCLVNTKLHMVPASKKIVMYTTAEDDLESMKKRTRAIFLCGAFAVCQL 70


>SB_32685| Best HMM Match : RCSD (HMM E-Value=0.18)
          Length = 530

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 208 KKKIVYYTSNNENLRLNAAYLIGSYQVC 291
           KK+I+++ S NE L  N + L+  ++VC
Sbjct: 11  KKRIIWFDSGNEPLAYNISSLVQRWKVC 38


>SB_19550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 557 VIEEESLYVF*HPLNSGEINNKLQFPKRSEGGSL 456
           V++  SL    HP   G+  N+L+ P+R  GG+L
Sbjct: 64  VLQSASLAPVPHPARLGDPPNRLERPRRVSGGAL 97


>SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 103 DEIVYENFYFDFGPYHLCHLYQFCKKLNEELDRNPKKKIVYYTSNNENL 249
           D I   N    F P    H      K NE ++RN + K V  TSN+  +
Sbjct: 375 DYIAISNRIITFKPGETSHEMNITIKTNEIVERNEEFKAVLTTSNSAQI 423


>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
          Length = 876

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 512 SGEINNKLQFPKRSEGGSLVK 450
           +G  NNK++ PK ++GGS+VK
Sbjct: 102 AGSGNNKVEPPKDNDGGSIVK 122


>SB_29054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +1

Query: 160 LYQFCKKLNEELDRNPK-----KKIVYYTSNNENLRLNAAYLIGSYQ 285
           L +F +K  EE D   +     KK+V YT  N N  L   +L+ ++Q
Sbjct: 234 LQEFERKKQEEEDEEIRQFVYAKKVVIYTKKNTNAYLPKQFLLSAFQ 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,422,697
Number of Sequences: 59808
Number of extensions: 323454
Number of successful extensions: 616
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)