Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0034
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_2775| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_7671| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0) 28 5.4
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_23637| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_16024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) 28 7.1
SB_18577| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_57352| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_29033| Best HMM Match : Ion_trans_2 (HMM E-Value=8.1e-29) 27 9.4
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 875
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 306 NTTSLDHAAGL*KIPPWSCKSRIRRR 383
+T SL+ AAG ++PP +C +R+R++
Sbjct: 15 DTVSLESAAGSKRLPPRACSNRVRKK 40
>SB_2775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 229 LTHGNTAFATFF*TEPSQLHEFTQSYQNEFRETDHFNISNDWNTNDNFCHH 77
L H N A++ +PSQ ++ + E D +N S+ ++ N++ HH
Sbjct: 4 LRHPNHRHASYSGRKPSQRNDDSSQVWCELLAKDKYNASDTFDPNNHTSHH 54
>SB_7671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 235 TELVKSSEEYLDRRRTRSLNAPSPIQQVWTMRQDYEKFRHGHANPG 372
TEL++ S E + RRR ++P VW +++ PG
Sbjct: 18 TELIRRSGEKMTRRRASQHSSPQSQTVVWMKKKEKRPLAWDRTRPG 63
>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
Length = 1596
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +1
Query: 319 WTMRQDYEKFRHGHANPGS--GVAEADLVKPPLTVLVIKKVHDAQILAPFVQL 471
W + + +F H H PG G A + P T + + H A + A V L
Sbjct: 1392 WLLGEIETRFNHSHGKPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTL 1444
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 213 LPSQHFFKQSHHSYTNSHRATKTSFAKPII 124
+PS H+F + Y +H +T A P+I
Sbjct: 1030 VPSHHYFTNRYSPYQRTHTSTTADGATPVI 1059
>SB_23637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 235 TELVKSSEEYLDRRRTRSLNAPSPIQQVWTMRQDYEKFRHGHANPG 372
TEL++ S E RRR ++P VW +++ PG
Sbjct: 18 TELIRRSGEKFTRRRASQHSSPQSQTVVWMKKKEKRPLAWDRTRPG 63
>SB_16024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 235 TELVKSSEEYLDRRRTRSLNAPSPIQQVWTMRQDYEKFRHGHANPG 372
TEL++ S E RRR ++P VW +++ PG
Sbjct: 47 TELIRRSGEKFTRRRASQHSSPQSQTVVWMKKKEKRPLAWDRTRPG 92
>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
Length = 330
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = -2
Query: 210 PSQHFFKQSHHSY---TNSH-RATKTSFAKPIILTYQTIGTR 97
PS H +SHH + ++SH +++ +S KP+I T+G R
Sbjct: 215 PSSHSTNRSHHHHHHHSSSHYKSSSSSSLKPLIPPSPTLGLR 256
>SB_18577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 302 PQYNKFGPCGRIMKNSAMVMQIQDPASQRL 391
PQ + FGPCG K +A+VM++ P+ + L
Sbjct: 103 PQVHYFGPCG---KYNALVMELLGPSLEDL 129
>SB_57352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 583 FFHPTVKSPILPQRSVSSKNCRLDEPPPCF 494
F H ++ P+R +S NC P PCF
Sbjct: 39 FEHNSISMGKTPKRKLSLSNCDNASPSPCF 68
>SB_29033| Best HMM Match : Ion_trans_2 (HMM E-Value=8.1e-29)
Length = 387
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +1
Query: 406 PLTVLVIKKVHDAQILAPFVQLVHWLVHDKSMVVVRRGGSFWMTHSFAGVLGTL 567
PL ++++K + D + + VH+L+ + V++R G + T++ LGTL
Sbjct: 131 PLNLMILKNLGDR--IKDVIHYVHFLLATR---VMKREGEYLTTYTLPWTLGTL 179
>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 323 PCGRIMKNSAMVMQIQDPASQRLTWSSLPSPCWSSRKFTT 442
P G +MK + V + + + + WS++ SP + F T
Sbjct: 527 PSGSVMKTTVTVWETKFVTASNIAWSTISSPLPMTTVFVT 566
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,382,751
Number of Sequences: 59808
Number of extensions: 474608
Number of successful extensions: 1355
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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