Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0045
(646 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08) 38 0.009
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05) 30 1.9
SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11) 28 5.7
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.5
SB_41690| Best HMM Match : DSL (HMM E-Value=0) 28 7.5
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 7.5
SB_6247| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1) 27 9.9
>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
Length = 418
Score = 37.5 bits (83), Expect = 0.009
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Frame = +2
Query: 14 GTCPELKPVNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLEGD----VVKVKN 172
G C + V N+T+Y G WY++ S F E E+N C +A+Y L D VV
Sbjct: 233 GPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKDGKIGVVNSNR 292
Query: 173 VHIIDGVKKYIEGTAKLTDYANKAAKLTVTFKFGEISRDGSVQVL 307
DG K I G A D KL V F + +GS +L
Sbjct: 293 DKKPDGELKQITGYAYQPD-PEVPGKLKV--HFDTVPVEGSYWIL 334
>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
Length = 442
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 90 NFPTNLRRTANALQLNTNWKVTW*RSRTCISSTASRSI*KGR 215
NF T +AL++ W VTW R C +T S + GR
Sbjct: 33 NFLTLFVFATDALRIRRFWGVTWWRDTRCSRATTSNCLKTGR 74
>SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 366 SLIKCVVWILSRNKKLEGDAKTAVDNFINEHSKEIDSSKLVHTDF 500
SL+K +W++ R ++ G V N HS ++ +S V+ DF
Sbjct: 617 SLVKTAIWVIKRPRR--GVWTLIVPNSAGSHSFKVSASSNVNIDF 659
>SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 731
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 158 VKVKNVHIIDGVKKYIEGTAKLTDYA 235
+K KN++I D KKY E +L+D+A
Sbjct: 305 LKTKNLNIQDSAKKYAEMQHRLSDFA 330
>SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11)
Length = 372
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 473 VYLFGVFIDEIIDSSFSVAFKLLVSRED 390
VY+F F+DE + +A KLLV E+
Sbjct: 137 VYVFAKFLDERLKRKIQIATKLLVKHEN 164
>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 928
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 318 IITTPSLTTANTMTRKSLIKCVVWILSRNKKLEGDAKTAVDNFINEHSKEIDSSKLVHTD 497
++ TP++ + + +C V I + N++ + D T V+NF + + V D
Sbjct: 77 LLDTPTINIKQEPLEEPIDECPVKIEALNRRRDNDITTVVNNFNDTSVVNGFNDTSVVND 136
Query: 498 FSEEAC--KFTSSSVITE 545
F++ + F +SV+ +
Sbjct: 137 FNDTSVVNGFNDTSVVND 154
>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
Length = 2798
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 311 TDYNNYAIAYNCKYDDKKKSHQVCRL 388
T Y +YA CKY D K H C L
Sbjct: 171 THYYSYACDKYCKYTDDKHGHYQCDL 196
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 360 RKSLIKCVVWILSRNKKLEGDAKTAVDNFINEHSKEIDSSKLVHTDFSEEACKF 521
R +IK + ++ KK+ D + VD+ + + K I S +TD ++ K+
Sbjct: 315 RNDIIKMIANATTQVKKILTDGRKTVDDGVLQQLKNIQSDSNYYTDLVKQYDKY 368
>SB_6247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/36 (25%), Positives = 23/36 (63%)
Frame = +3
Query: 390 ILSRNKKLEGDAKTAVDNFINEHSKEIDSSKLVHTD 497
+++ ++ D+K+ +D+F+ +I+SS ++H D
Sbjct: 166 LINEPTRITIDSKSLIDHFVTSSPDKINSSGVIHID 201
>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1855
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/41 (24%), Positives = 25/41 (60%)
Frame = +3
Query: 390 ILSRNKKLEGDAKTAVDNFINEHSKEIDSSKLVHTDFSEEA 512
+L+ ++ +K+ +D+F+ K+I+SS ++H S+ +
Sbjct: 364 LLNEPTRITMHSKSLIDHFVTSCPKKINSSGVIHLGLSDHS 404
>SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)
Length = 508
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 80 EISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVK 196
E+ ++ ESE+NGK SS + + V +K + + DG K
Sbjct: 38 EVFEWRFESEENGKMSSV-MTIHSNTVPLKEIGLWDGAK 75
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,163,647
Number of Sequences: 59808
Number of extensions: 365065
Number of successful extensions: 1065
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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