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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0038
         (337 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             180   2e-46
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.13 
SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)            28   2.2  
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)              27   2.9  
SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)                       27   3.8  
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)                  27   5.0  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_9388| Best HMM Match : SRP54_N (HMM E-Value=4.8)                    26   6.6  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           26   6.6  
SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)                   26   8.7  
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         26   8.7  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  180 bits (439), Expect = 2e-46
 Identities = 84/112 (75%), Positives = 101/112 (90%)
 Frame = +2

Query: 2   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
           MK N +V+SSRRK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60

Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 337
           H+K QQVGKV+QVYRKK+V++I+RIQREKANGAT  VGIHPSK  IVKLK++
Sbjct: 61  HFKSQQVGKVIQVYRKKWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKID 112


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 2   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 154
           MK + Q+    RK+ K H   P HIR+    S + K +R+  N  + P  IRK
Sbjct: 1   MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFAN 146
           L +++  ++YN+L  +H+ H  N L  V  T+  N +V A+
Sbjct: 338 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLVAAH 378



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIV 155
           L +++  ++YN+L  +H+ H  N L  V  T+  N +V
Sbjct: 182 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLV 219



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIV 155
           L +++  ++YN+L  +H+ H  N L  V  T+  N +V
Sbjct: 194 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLV 231



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIV 155
           L +++  ++YN+L  +H+ H  N L  V  T+  N +V
Sbjct: 206 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLV 243



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIV 155
           L  ++  ++YN+L  +H+ H  N L  V  T+  N +V
Sbjct: 326 LVEVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLV 363



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIV 155
           L +++  ++YN+L  +H+ H  N +  V  T+  N +V
Sbjct: 278 LVAVHVTHLYNRLVAVHVSHLYNRMVAVHVTHLYNRMV 315


>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
          Length = 606

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 8   FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 160
           F+    S  +K+ +R+F   +HI + + +S  SK+ ++    K    + DD
Sbjct: 124 FSTSQASRPKKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDD 174


>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +2

Query: 68  SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQ--VVRGHYKGQQVGKVMQVYRK 229
           + ++++   + + K LR+    K+MP R+D+++Q  V    YK ++VG+  +  R+
Sbjct: 139 NEVKQLGNGNNMEKILREFIKKKNMPKREDEKLQGNVSGRDYKNKKVGQKSEEQRE 194


>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
          Length = 586

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 61  CSFTYKASVDVLSPV*GTKTKIQCKIHAYSQR 156
           CS   K  ++ L+ + GT  KI+ K HA+S++
Sbjct: 72  CSCKTKTELNALNELLGTDEKIEKKSHAWSEK 103


>SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)
          Length = 869

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFANR 143
           L S+N L   N+L TI+L    NLL  +    ++N ++  NR
Sbjct: 503 LLSINRLLSINRLLTINLLLSINLLLSINRLLSINLLLSINR 544


>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 228 KSLLYTLRGFKEKRPMVQQHMSAF 299
           KSL+Y    FK KRP V +  SAF
Sbjct: 195 KSLIYEPSRFKPKRPSVSKLKSAF 218


>SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -1

Query: 322 DNHTL*RVNADICCCTIGLFSLNPLNVYNKLFTIHLHHFANLLAFVVSTY-NLNFIVFAN 146
           DNH   R+N D CC   GL   + L      + I   H+  +   VV  Y   +F+ + N
Sbjct: 242 DNHLNMRINTDPCCRRNGLEMAHHLATLLDKYDI---HYVLISGAVVGWYRERDFVPYDN 298

Query: 145 RHGFYIE 125
              F I+
Sbjct: 299 DVDFIID 305


>SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 285

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 44  RKRHFSAPSHIRRVLMSSP 100
           R  H S PSH RRVL  SP
Sbjct: 39  RVLHLSPPSHARRVLSLSP 57


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 216  RCIVKSLLYTLRGFKEKRPMVQQHMSAFTLQS 311
            RC V ++  T+RGF  +  + +QH +A  +Q+
Sbjct: 2147 RCAVIAIQATIRGFLTRSLLSRQHNAATAIQT 2178


>SB_9388| Best HMM Match : SRP54_N (HMM E-Value=4.8)
          Length = 286

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 74  IRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQ 217
           I+R+L SS LSK LR+K    S    KD E +  + H     V ++ Q
Sbjct: 51  IQRILESSDLSKTLREKLTTLS---SKDAEKESEKRHIMFGLVKEIWQ 95


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -3

Query: 329 ST*QSHTLKGE-CRHMLLHHWP--FLFESSQCIQQTFYD 222
           ST  +  L+G+ CR M+L HWP  F  +  + + +T  D
Sbjct: 337 STYDTWPLQGDFCRTMMLLHWPNWFSLDELESVDETSKD 375


>SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/75 (22%), Positives = 37/75 (49%)
 Frame = +2

Query: 14  KQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKG 193
           K+  S ++ + K+H S+  HI+ +     + K   +  N+K++  + +       G  KG
Sbjct: 93  KETLSKKKSSIKKHVSSAKHIKSI---ENIKKSKTKDQNIKNILTKSN-------GAAKG 142

Query: 194 QQVGKVMQVYRKKFV 238
             + + M++YR + V
Sbjct: 143 ATLPEDMRIYRYELV 157


>SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)
          Length = 1283

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 255 ILSMYTTNFLRYTCITL 205
           ILS+  T F++YTCI L
Sbjct: 244 ILSLQLTQFIQYTCIML 260


>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1446

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 158 DEVQVVRGHYKGQQVGKVMQVYRKK 232
           DE+Q ++   + Q+VGK++ V ++K
Sbjct: 39  DELQTIQNEPQSQKVGKLLDVVQRK 63


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 289 CRHSPFKVCDCQVEDE 336
           CRH+PF V DC+ E +
Sbjct: 870 CRHNPFGVHDCKHEHD 885


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,717,539
Number of Sequences: 59808
Number of extensions: 215542
Number of successful extensions: 628
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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