SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0035
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                338   2e-93
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           48   5e-06
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            39   0.003
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)       32   0.47 
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)                31   1.1  
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)             30   1.4  
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)                 29   2.5  
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)                    29   3.3  
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)                 29   3.3  
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)                    29   3.3  
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)                   28   5.7  
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             28   5.7  
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)                 28   7.6  
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)                 28   7.6  
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)           28   7.6  
SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)               28   7.6  
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)         28   7.6  
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)                  28   7.6  
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)                       28   7.6  
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  338 bits (831), Expect = 2e-93
 Identities = 153/195 (78%), Positives = 177/195 (90%)
 Frame = +1

Query: 4   LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
           LPLQDVYKIGGIGTVPVGRVETGVLKPGT+V F+P+NITTEVKSVEMHHE+L EA+PGDN
Sbjct: 107 LPLQDVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDN 166

Query: 184 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 363
           VGFNVKNVSVK+++RG VAGD KNNPPK    FTAQVIV+NHPG+I  GY+PVLDCHTAH
Sbjct: 167 VGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAH 226

Query: 364 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 543
           IACKF ++ EK+DRR+GK  E NPK IK+GDAA+V ++PSKP+CVE+F EFPPLGRFAVR
Sbjct: 227 IACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVR 286

Query: 544 DMRQTVAVGVIKAVN 588
           DM+QTVAVGVIK+V+
Sbjct: 287 DMKQTVAVGVIKSVD 301


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +1

Query: 397 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 546
           +D++TGK  +  P+ IK    AI  L     +C+E F +F  +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +1

Query: 460 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 576
           A V L  S+P+CVE ++++  LGRF +R    T+A GVI
Sbjct: 40  AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78


>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
          Length = 1064

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = -2

Query: 249 GVTSNITTTQFLDGHVLYVETYIVSRYSFLESFVVHLHRLDFSSDVGGGKDNNGTWFQHT 70
           G T   TTT      V    T ++SRYS++E  + H +     S        + TW Q  
Sbjct: 86  GQTDRRTTTHTATSVVENPYTSLISRYSYIEKLMTHHYTYRHISGGDPLHIPDLTWEQLK 145

Query: 69  SFNSADGHGTNTTDFVY 19
            F++   H +N   + Y
Sbjct: 146 KFHATHYHPSNARFYTY 162


>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +1

Query: 361 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 489
           HIA K  E+K   D ++ K+ ++ PK++ SGD    ++VP++P
Sbjct: 74  HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -3

Query: 449  DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQSK 342
            DL +F  G+T++ LP   ST  +    NLQ  W +WQSK
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQSK 2494


>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
          Length = 726

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 382 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 522
           EI     R TG++TE+N  ++ SG+  I  +V +   C+   Q + P
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLYGP 301


>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
          Length = 173

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 22  YKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGD 180
           + I G GT+  G + +G +     V      +T +VKS++M  + + +A  GD
Sbjct: 120 FSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKKPVDKASQGD 172


>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
          Length = 903

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
           +++VP++P CV SF EF  +    +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409


>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
          Length = 495

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 587 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 489
           LT+L  PT    L  RT  +PR G  W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441


>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
          Length = 665

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -3

Query: 230 PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT-PVSTLP 54
           P      +T    + TLSPGT +   +        S   +A  +TT+ P   T PV+TLP
Sbjct: 17  PETTVSPETTAVPETTLSPGTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLP 76

Query: 53  TGTVPIP 33
             +   P
Sbjct: 77  PDSTMAP 83


>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
          Length = 189

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 355 TAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 534
           T H+A  + E   ++ + T K   V+  S     + + +L         S +EFP LG+ 
Sbjct: 103 TVHLAALYIEHMTEIIQNTEKPPSVSDASSPGTTSDLDDLETDFTFSDFSLEEFPELGKL 162

Query: 535 AVR 543
           A+R
Sbjct: 163 ALR 165


>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
          Length = 1097

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 572 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 477
           TP+  VCL+SR  + PR    W     R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +1

Query: 10  LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI----TTEVKSVEMHHEALQEAVPG 177
           + D Y + G+GTV  G    G+++    ++  P  +       ++S+      ++E   G
Sbjct: 109 IDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGPDPLGQFQPVAIRSIHRKRMPVKEVRGG 168

Query: 178 DNVGFNVK 201
               F++K
Sbjct: 169 QTASFSLK 176


>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
          Length = 904

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
           ++++P++P CV SF EF  +    +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410


>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
          Length = 1175

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
           +++ P++P CV SF EF  +    +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414


>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
          Length = 549

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
           +++ P++P CV SF EF  +    +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418


>SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 109 ANITTEVKSVEMHHEALQ-EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 264
           A+ TT          A+Q E  PG ++G   + + VKEL++   AG +   PP
Sbjct: 49  ASATTSTTGSHQAMSAMQSEEEPGASMGHRTERLKVKELKQMKRAGLTPLRPP 101


>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 1131

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 466  VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
            +++ P++P CV SF EF  +    +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073


>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 887

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
           +++ P++P CV SF EF  +    +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561


>SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 94  VVFAPANITTEVKSVEMHHE-ALQEAVPGDNVGFNVKNVSVKELRRGYV 237
           VVF P NI+ +   ++     A ++ +P     + +KN    + R GYV
Sbjct: 14  VVFDPENISVDEGMIKFKGRLAFRQYMPAKPTKYGIKNWMAADARNGYV 62


>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
          Length = 1285

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 466  VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
            +++ P++P CV SF EF  +    +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140


>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
          Length = 605

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
           +++ P++P CV SF EF  +    +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213


>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
          Length = 447

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 140 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 15
           +TD+TS+ M+    TT +      ++T  T  + I  I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275


>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
           +++ P++P CV SF EF  +    +RD+ Q
Sbjct: 3   MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32


>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 322 SNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV-PSKP 489
           +N   P+L+  T  +A        K D  T  + +VN KS   G  +I+    P+ P
Sbjct: 586 ANALNPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPNSP 642


>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
           +++ P++P CV SF EF  +    +RD+ Q
Sbjct: 87  MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116


>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
           +++ P++P CV SF EF  +    +RD+ Q
Sbjct: 3   MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32


>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
           +++ P++P CV SF EF  +    +RD+ Q
Sbjct: 3   MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,199,392
Number of Sequences: 59808
Number of extensions: 502563
Number of successful extensions: 1688
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1684
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)

- SilkBase 1999-2023 -