Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0028
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16225| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_40704| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   7.9  
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)             27   7.9  

>SB_16225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
 Frame = +3

Query: 183 VHLLFNNPRRFLELQIYKIWQVTEVICRNFGIMLWIL-------XLKFSLPFKYCLIMRT 341
           +H   +N    L L+    W V ++IC   G  +W L        +   LPF+Y  +M  
Sbjct: 86  IHQTTHNTAWCLSLEACVAWIVVDIICA--GASIWYLAIISIDRFIAIVLPFRYHALMTP 143

Query: 342 LC-YIV*RSIFC*SLNWV-SVLSIINYRKWXQXNLII*ISGSQTYFVYRPL*E*IIF*RP 515
           +  + +  S++   L++V +VLS IN+  + + +  I IS +    +Y  +   ++F  P
Sbjct: 144 ISGFGLIASVW--GLSFVMAVLSFINWTDYGKPHFNIFISCANFDPIYYTVVSVVLFFLP 201

Query: 516 HFL 524
            ++
Sbjct: 202 LYI 204


>SB_40704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 262 QMTSVTCQILYIWSSKNLRG-LLNNKCTHPQ 173
           Q  S+T Q LY WS K     LL+N CT  Q
Sbjct: 134 QRRSITTQHLYAWSEKIREAVLLHNTCTPGQ 164


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 208 RGLLNNKCTHPQHDPVWCGFWP 143
           RG  +N CT  +H+  WC   P
Sbjct: 327 RGKRHNSCTRARHNRPWCAMTP 348


>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
          Length = 419

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 455 WFPNLFCVPPTLRINYFLAPP 517
           ++P+ +C P  +RI  +L PP
Sbjct: 398 FYPSQYCTPSRIRIGLYLGPP 418


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,944,594
Number of Sequences: 59808
Number of extensions: 317128
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)