Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0007
(808 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 99 4e-21
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 36 0.039
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21) 33 0.36
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 32 0.63
SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.63
SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35) 32 0.63
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 31 0.83
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 31 0.83
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 2.5
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 30 2.5
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042) 29 3.4
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 29 5.9
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032) 29 5.9
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 29 5.9
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 7.7
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 28 7.7
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 28 7.7
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 28 7.7
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 99.1 bits (236), Expect = 4e-21
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
Frame = +2
Query: 89 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFD--GIEKF 262
PS +D+ + A D +++++ F+ S L+ V+T EK LPSA + E + L D + F
Sbjct: 627 PSQEDIKEEAVDSRAEVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASF 686
Query: 263 DSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVI 442
D+S+LKH E QEKNPLP KD I E + + ++ FD +KLKH +T EKNPLP I
Sbjct: 687 DASKLKHVEVQEKNPLPTKDDITTESTETR--AEVKTFDHSKLKHVQTEEKNPLPDAKTI 744
Query: 443 EQEKSA 460
QEK++
Sbjct: 745 AQEKAS 750
Score = 92.7 bits (220), Expect = 3e-19
Identities = 50/110 (45%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Frame = +2
Query: 128 KSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNP 307
+++++ F S L+ V+T EK LP+ + +A EK + + F G+E F ++LKH ET EKNP
Sbjct: 451 RAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNP 509
Query: 308 LPDKDAIEAE--KEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 451
LPD I AE E + + FD +KLKH ET EK +PTKDVIE E
Sbjct: 510 LPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 84.6 bits (200), Expect = 8e-17
Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Frame = +2
Query: 131 SQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKN 304
S +E F + L+ V+T EK LP A+++ E + L D E KFD+S+LKH ET+EK
Sbjct: 489 SGVEVFQKNKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKV 548
Query: 305 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 451
+P KD IEAE ++ +++FD +KLKH T EKNPLPT + +E
Sbjct: 549 VMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVVTQEKNPLPTPQTLHEE 595
Score = 82.2 bits (194), Expect = 4e-16
Identities = 46/118 (38%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Frame = +2
Query: 104 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKH 283
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E ++ FD S+LKH
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKH 577
Query: 284 TETQEKNPLPDKDAIEAEK-EKNK-FLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 451
TQEKNPLP + E KNK + + +FD TKLKH T EK+ +P+++ I++E
Sbjct: 578 VVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
Score = 72.9 bits (171), Expect = 3e-13
Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Frame = +2
Query: 173 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 352
DT ++I P +E + K + KFD++ LKH +T+EKN LP + I+ E + ++
Sbjct: 389 DTPQQI-WPGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDE 447
Query: 353 FLN--GIENFDPTKLKHTETCEKNPLPTKDVIEQEK 454
F + +++F+ +KL+H ET EKN LPTKD I EK
Sbjct: 448 FPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK 483
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 35.9 bits (79), Expect = 0.039
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 92 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFD 247
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFE 385
>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
Length = 900
Score = 32.7 bits (71), Expect = 0.36
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 167 DVDTNEKIVLPSAEDVATEKTQKSLFDG-IEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 343
DV + P+ A EKT K + DG +EK+ + +T + L D D E+E
Sbjct: 341 DVIGKPPAIPPAQVQAAEEKTPKDIIDGLLEKYKEIGSQMADTSADDGLDDDD---VEEE 397
Query: 344 KNKFLNGIENFDPTKLK 394
+ L+ + F TK K
Sbjct: 398 DDDVLDEADRFRDTKRK 414
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 31.9 bits (69), Expect = 0.63
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +2
Query: 95 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQ 274
L DL +V +LKS+ EG CL D++ + DV E I + + +
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKEHENLKSAVSISEGELLK 1183
Query: 275 LKHTETQEKNPLPDK 319
K+T EK K
Sbjct: 1184 FKNTLQSEKEEFEKK 1198
>SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 31.9 bits (69), Expect = 0.63
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Frame = +2
Query: 200 SAEDVATEKTQ--KSLF--DGIE-KFDSSQLKHTETQEKNPLPDKDAIEAEK-----EKN 349
S+E+VA KT+ +SL D ++ K+ SSQ+ ET++ K ++E+ EK
Sbjct: 142 SSEEVAKWKTKLRRSLSKTDALDGKYSSSQIDKLETKQAIKSKKKKRRKSEEKELLGEKV 201
Query: 350 KFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEK 454
N +N + TK +H++ EKN Q+K
Sbjct: 202 DQFNSKKNLNRTKERHSKKMEKNRQDNSKTRSQQK 236
>SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35)
Length = 430
Score = 31.9 bits (69), Expect = 0.63
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Frame = +2
Query: 74 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDT----NEKIVLPSAEDVATEKTQ-KS 238
SV D P + + ++ T +K +LE ++ D++T ++ LP+A V T+K+ K
Sbjct: 218 SVKDHPVIARIVQLRTLIK-ELEPTDSRLEEDIETLLAMHKNGELPNASMVQTKKSNLKV 276
Query: 239 LFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 352
+ + S + KHT+ ++ +PL + ++ +K K K
Sbjct: 277 KLNMRHQAKSKKRKHTDKEDIDPLAYYEEVKMKKMKAK 314
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 22 ESSIPFLIKNILIQNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 156
E S+PF N QN ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +2
Query: 260 FDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDV 439
+D Q K E PD+D +E E+E NG+E+ D K + PT DV
Sbjct: 839 YDVKQRKRLEQHASYEAPDEDEMEIERE---LQNGLESGDEDDTKADAQRSETNSPTLDV 895
Query: 440 IEQE 451
Q+
Sbjct: 896 ETQQ 899
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 74 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 220
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
Length = 385
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 194 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLP 313
L S D EKT D +E+F S +H T +KNPLP
Sbjct: 194 LSSRSDHVQEKT-----DRLEQFSSQTGRHINTTKKNPLP 228
>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
Length = 1558
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Frame = +2
Query: 161 LRDVDTNEKIVLPSAEDV------ATEKTQKSLFDGIEKFDS---SQLKHTETQEKNPLP 313
++D+ T E+++ AED A E ++++F+ EK +S + + TE Q+K
Sbjct: 1137 MKDLTTEEELIASYAEDAERAAEAAKEYRERTMFEIAEKINSIKEQRRQQTEAQKKKMDE 1196
Query: 314 DKDAIEAEKEKNK 352
+ +EAE E+ +
Sbjct: 1197 EIRRLEAELEEER 1209
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 524 LM*VRSICVVHYKFYFCFCTMATLPG 601
L+ V IC VH FY+C C +++ G
Sbjct: 55 LVAVLRICSVHLDFYYCTCVWSSMAG 80
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 278 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEK 415
+HTE + +P P K I+ E +++ + I+ KH+ +CE+
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCER 257
>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
Length = 966
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 298 EEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGDVRKEP 420
EEP+ + +G KE+ E RE R H + V++EP
Sbjct: 840 EEPSDEEESEEAGREKEEEEEDQREGRDHNDDEESVVKEEP 880
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 244 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRS 381
RR +E+ AE H+ EPA + R+ SGE E+ H E++S
Sbjct: 35 RREQEIIELKAELHKRDDLEPAGQRHRHDSGESFEE----HEEIKS 76
>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
Length = 1293
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 244 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRS 381
RR +E+ AE H+ EPA + R+ SGE E+ H E++S
Sbjct: 11 RREQEIIELKAELHKRDDLEPAGQRHRHDSGESFEE----HEEIKS 52
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 481 VTRKCISLVSPYFNIDVSQIDL 546
+ KC L+SPY ++D+ DL
Sbjct: 13 IAAKCTQLISPYLDLDIKYFDL 34
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 28.3 bits (60), Expect = 7.7
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Frame = +2
Query: 92 SLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSS 271
SL D ++ S+L S LR +D+N + + S D E +K L +
Sbjct: 1409 SLSDKRPAPMNITSRLS--KISPLRALDSNAECAVSSDSDSELEDEKKPLASFCSQVKMH 1466
Query: 272 QLKHTETQEKNPLPDKDAIEAEKEKNKF-LNGIENFDPTKLKHTETCEKN 418
+ K + + LP++ A + KN+ + N L+ ++T EK+
Sbjct: 1467 KTKEQQCNVEKTLPEESAQKRTFVKNRTDMASSLNIRRRHLEDSKTLEKS 1516
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 233 KSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHT--ET 406
KS+F + + + TET+E NP D +AE+ + G + T+ K T ET
Sbjct: 276 KSVFKRNRPTEPASVPSTETKEANPNVTADTKQAEQNEGSMSEGTTSKTITENKTTNMET 335
Query: 407 CEKNPL 424
K L
Sbjct: 336 LRKEML 341
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Frame = +2
Query: 215 ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDAIEAEKEKNKFLN 361
A T L DG+ D ++ +H + T E++P DK + L+
Sbjct: 226 ALRDTTHDLLDGLRYSDQAKEEHAKLIPKYHEIMIKTIEQDPTSDKSYKALRDTTHDLLD 285
Query: 362 GIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 460
G+ +FD K +H + K IEQ+ ++
Sbjct: 286 GLRDFDQAKEEHAKLIPKYHKIMIKTIEQDPTS 318
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 39 PHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTP 179
P + + E P P + L P T+ P+ V +ASTP S +P
Sbjct: 517 PRNSFAEYEKPLPTLPLSPTNTTTGRPRLSTVPPEASTPTDSFPKSP 563
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,896,561
Number of Sequences: 59808
Number of extensions: 521171
Number of successful extensions: 1630
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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