Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0004
(374 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53339| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 1e-20
SB_23823| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_11710| Best HMM Match : Urease_alpha (HMM E-Value=0) 31 0.23
SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.30
SB_56929| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_48855| Best HMM Match : Amidohydro_3 (HMM E-Value=0.2) 29 1.6
SB_2006| Best HMM Match : Aldolase (HMM E-Value=4.7) 29 1.6
SB_2005| Best HMM Match : Amidohydro_3 (HMM E-Value=2.38221e-44) 29 1.6
SB_45637| Best HMM Match : Amidohydro_3 (HMM E-Value=4.2e-22) 27 3.7
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42) 27 6.5
SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013) 27 6.5
SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13) 26 8.7
SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032) 26 8.7
>SB_53339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 894
Score = 95.5 bits (227), Expect = 1e-20
Identities = 39/69 (56%), Positives = 54/69 (78%)
Frame = +1
Query: 10 GRIVNDDGIEEADVYIEDGIIKQVGRNLIIPGGTRTIDAAGKLVMPGGIDPHTHFELEMM 189
G IVNDD + EADVYIE+G+IK++ +++I PGGT+ IDA+ KL++PGGID HTH ++ M
Sbjct: 16 GTIVNDDQMFEADVYIENGLIKEISKSVICPGGTKVIDASRKLILPGGIDTHTHLQMPFM 75
Query: 190 GAKTADDFY 216
G DDF+
Sbjct: 76 GTTAIDDFF 84
>SB_23823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 37.5 bits (83), Expect = 0.004
Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 28 DGIEEADVYIEDGIIKQVGRNLIIPGGT-RTIDAAGKLVMPGGIDPHTH 171
DG+ E V ++DG I VG NL + DA G LVMPG ID HTH
Sbjct: 23 DGVTE--VAMKDGKIMAVGDNLEFQHEPLQVFDAKGCLVMPGLIDMHTH 69
>SB_11710| Best HMM Match : Urease_alpha (HMM E-Value=0)
Length = 726
Score = 31.5 bits (68), Expect = 0.23
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Frame = +1
Query: 31 GIEEADVYIEDGIIKQVGR------------NLIIPGGTRTIDAAGKLVMPGGIDPHTHF 174
GI +ADV ++DG I +G+ +++ GT I G ++ GG+D H HF
Sbjct: 383 GIVKADVGLKDGRIVGIGKAGNPDVMAGVTEGMVVGVGTEAIAGEGLVLTAGGMDAHIHF 442
>SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 31.1 bits (67), Expect = 0.30
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 46 DVYIEDGIIKQVGRNLIIPGG--TRTIDAAGKLVMPGGIDPHTH 171
D+YI+DG + +G+ P T TIDA G +V PG +D H
Sbjct: 102 DLYIQDGKVIAIGQ---APDAAITETIDATGLVVTPGLVDLCAH 142
>SB_56929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 118 IDAAGKLVMPGGIDPHTH 171
IDA G V+PG ID HTH
Sbjct: 87 IDATGMCVLPGLIDGHTH 104
>SB_48855| Best HMM Match : Amidohydro_3 (HMM E-Value=0.2)
Length = 391
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 109 TRTIDAAGKLVMPGGIDPHTH 171
T ID GK + PG I+PH H
Sbjct: 53 TTVIDLEGKTMFPGFIEPHQH 73
>SB_2006| Best HMM Match : Aldolase (HMM E-Value=4.7)
Length = 186
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 109 TRTIDAAGKLVMPGGIDPHTH 171
T ID GK + PG I+PH H
Sbjct: 53 TTVIDLEGKTMFPGFIEPHQH 73
>SB_2005| Best HMM Match : Amidohydro_3 (HMM E-Value=2.38221e-44)
Length = 572
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 109 TRTIDAAGKLVMPGGIDPHTH 171
T ID GK + PG I+PH H
Sbjct: 53 TTVIDLEGKTMFPGFIEPHQH 73
>SB_45637| Best HMM Match : Amidohydro_3 (HMM E-Value=4.2e-22)
Length = 579
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 58 EDGIIKQVGRNLIIPGGTRTIDAAGKLVMPGGIDPHTHFELEMMGAKTAD 207
ED + + G+N T+ I + VMPG I+PH H + +K D
Sbjct: 75 EDHVFQHAGKN------TKFIHLNNQTVMPGLIEPHQHAITVALFSKITD 118
>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 7 MGRIVNDDGIEEADVYIEDGII-KQVGRNLIIPG 105
MG VNDDGI++ V + ++ +VGR+L + G
Sbjct: 784 MGGCVNDDGIDDGVVIVMMIMLDAEVGRSLALTG 817
>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
Length = 1644
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 189 HHFQLEVSVGVDAPGHDQFASGIDGPCASRNDEV 88
HHF +E V + PG D GI CAS+ ++
Sbjct: 1367 HHFHMETQVALTVPGED----GITIFCASQGTDL 1396
>SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 26.6 bits (56), Expect = 6.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Frame = +1
Query: 13 RIVNDDGIEEADVYIEDGIIKQVGRNLIIPGGTRT------IDAAGKLVMPGGIDPHTH 171
+IV D I + ++DG I Q+ + R IDA ++MPG +D H H
Sbjct: 9 KIVLSDRIISGYIKVKDGKICQIEETIPDVAQIRDENSCKIIDAEELVIMPGVVDSHVH 67
>SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 159 VDAPGHDQFASGIDGPCASRND 94
+D+P HD+F ++ P SR D
Sbjct: 839 MDSPQHDEFNDSMNSPVGSRRD 860
>SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
Length = 808
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 13 RIVNDDGIEEADVYIEDGIIKQVGRNLIIPGGT 111
R+V+D G E +D DG I+ + R ++ P T
Sbjct: 650 RVVSDSGSESSDTEESDGFIEYLPRQVMGPEHT 682
>SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13)
Length = 600
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 75 ASWPQPHHSWRHTDHRCRWQTG--HARGHR 158
ASWP HS+R T R + +RGHR
Sbjct: 185 ASWPLAKHSFRITSERLGFVAALLESRGHR 214
>SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)
Length = 807
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = +2
Query: 101 LEAHGPSM-PLAN----WSCPGASTPTLTSSWK*WALKLPMTSTRAPGLRSPEGQQP*LT 265
LE H P + PL N + G S SWK A LP+ +PG+ E P T
Sbjct: 142 LEIHSPGITPLGNPQSRYYSSGNSQSRYYPSWKSTAQVLPLLEIHSPGITLLEIYSPGFT 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,493,418
Number of Sequences: 59808
Number of extensions: 269197
Number of successful extensions: 893
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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